doi:10.1016/j.pep.2005.10.015
Copyright © 2005 Elsevier Inc. All rights reserved.
Preparation of isotopically labeled spinach acyl–acyl carrier protein for NMR structural studies
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Gregory A. Zornetzer, Robert D. White, John L. Markley and Brian G. Fox
, 
Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706-1549, USA
Received 19 July 2005;
revised 4 October 2005.
Available online 7 November 2005.
Abstract
Acyl carrier proteins (ACPs) are important protein cofactors in fatty acid biosynthesis, but their acylated forms have not been well-studied. To permit detailed nuclear magnetic resonance studies of acylated spinach ACP isoform I, we have developed a new expression plasmid for recombinant production of the apo-protein and modified protocols for purifying the protein product and acylating it to form acyl-ACP. To solve plasmid stability problems associated with growth in minimal media, the ampicillin resistance gene from pSACP-2a was replaced with the tetA(C) gene from pBR322. The resulting plasmid, pSACP-2t, supported overexpression of apo-ACP in Escherichia coli BL21(DE3) cells in M9 medium containing 15NH4Cl as the sole nitrogen source. Apo-ACP was purified to homogeneity by means of polyethylene glycol precipitation and anion exchange. Two in vitro synthetic routes were used to produce acyl–ACPs. In one route, apo-ACP was converted to the holo form and the acyl form by a published protocol that employs a discrete enzymatic reaction for each step. As an alternative route to produce decanoyl-ACP, apo-ACP was directly converted to the acyl form by using holo-ACP synthase along with the non-natural substrate decanoyl-CoA. Two-dimensional 1H–15N NMR spectroscopy of decanoyl-ACP and stearoyl-ACP revealed that changes in the length of the covalently attached fatty acid do not affect the secondary structure of the protein but do influence the local conformation and dynamics.
Keywords: Acyl carrier protein; NMR; 15N HSQC; Acylation; Fatty acid biosynthesis; Acyl-acyl carrier protein synthase; Holo acyl carrier protein synthase; Spinach
Fig. 1. Schematic showing the two methods used to produce acyl-ACP. (A) Expression of the acpP gene gives rise to apo-ACP. (B) Conversion of apo-ACP to holo-ACP by action of holo-ACP synthase. (C) In vitro acylation with free fatty acid by reaction with acyl-ACP synthetase [14]. (D) Direct in vitro conversion of apo-ACP to acyl-ACP by the reaction of holo-ACP synthase in the presence of acyl-CoA [15].
Fig. 2. (A) Ampicillin-selectable pSACP-2a plasmid originally created for expression of spinach ACP [26]. (B) Tetracycline-selectable pSACP-2t plasmid found to be suitable for expression of spinach ACP in a chemically defined medium required for isotopic labeling in preparation for NMR structural studies. The positions of restriction sites used for cloning and digestion mapping are indicated.
Fig. 3. Time course of the fermentation used to express spinach ACP. The solid line shows the agitation rate while the dashed line shows the dissolved O2. The arrow at
10 h shows the point at which the initially added glucose was judged to be depleted and at which re-feeding, induction of protein expression, and temperature change were initiated. The arrow at
15.5 h shows where the cells were harvested.
Fig. 4. Time course of the expression of spinach ACP as monitored by denaturing gel electrophoresis. Lane 1, corresponds to molecular weight markers; lane 2, is an analysis of cellular proteins present at the time of induction (
10 h in Fig. 3); lanes 3–5 are analyses of cellular proteins obtained from cells harvested at, respectively, at 1, 3, and 5 h after induction. The amount of protein loaded in each lane was normalized to the cell density indicated by OD600 measurements. The arrow indicates the position of the ACP on the gel.
Fig. 5. Purification of spinach ACP as monitored by denaturing gel electrophoresis. Lane 1, corresponds to molecular weight markers; lane 2, is an analysis of the cell lysate; lane 3, contained the re-suspended pellet from the 50% PEG 3350 precipitation; lane 4, contained purified apo-ACP obtained from anion exchange chromatography. The arrow indicates the position of ACP on the gel.
Fig. 6. Five hundred megahertz 2D 1H–15N HSQC spectra of 2 mM spinach 10:0-ACP (blue) and 18:0-ACP (red) with >98% enrichment of 15 N in the protein (the phosphopantetheine group was not 15N-labeled in these samples). The sample temperature was controlled at 14 °C. The solution conditions were 10 mM Mes buffer, pH 6.1, containing 100 mM NaCl. The 1H and 15N carrier were positioned at 4.92 ppm (position of the water signal) and 118.2 ppm, respectively. A total of eight transients of 128(t1) × 1024(t2) complex data points were collected with spectral widths of 13 ppm for 1H and 33 ppm for 15N.
Table 1.
Purification of the apo form of spinach acyl carrier protein
a Total protein estimated by dye binding
[30].
b ACP yield estimated from total protein and purity calculations.
c Purity of ACP estimated by densitometry of denaturing electrophoresis gels by using NIH ImageJ (by W.S. Rasband. Available from the National Institutes of Health at http://rsb.info.nih.gov/ij/).
This work was supported by the National Institutes of Health Grants R01 GM-50853 to B.G.F. and R01 GM-58667 to J.L.M. NMR data were collected at the National Magnetic Resonance Facility at Madison (NMRFAM), which is supported by a grant from the NIH Biomedical Research Technology Program (P41 RR-02301) and contains instrumentation purchased with funds from P41 RR-02301, the University of Wisconsin, the NSF Biological Instrumentation Program (DMB-8415048), NIH Shared Instrumentation Program (RR-02781), and the U.S. Department of Agriculture. G.A.Z. and R.D.W. were trainees of the NIH Institutional Biotechnology Pre-Doctoral Training Grant T32 GM-08349.

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