Review
Toward specific functions of poly(ADP-ribose) polymerase-2

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Poly(ADP-ribose) polymerase-2 (PARP-2) belongs to a family of enzymes that catalyze poly(ADP-ribosyl)ation of proteins. PARP-1 and PARP-2 are so far the only PARP enzymes whose catalytic activity has been shown to be induced by DNA-strand breaks, providing strong support for key shared functions in the cellular response to DNA damage. Accordingly, clinical trials for cancer, using PARP inhibitors that target the conserved catalytic domain of PARP proteins, are now ongoing. However, recent data suggest unique functions for PARP-2 in specific processes, such as genome surveillance, spermatogenesis, adipogenesis and T cell development. Understanding these physiological roles might provide invaluable clues to the rational development and exploitation of specific PARP-2 inhibitor drugs in a clinical setting and the design of new therapeutic approaches in different pathophysiological conditions.

Introduction

Poly(ADP-ribosyl)ation is an immediate but transient post-translational modification of proteins with a homopolymeric chain of repeating ADP-ribose units, mediated by the poly(ADP-ribose) polymerase (PARP) enzymes. This modification is a dynamic process, as indicated by the short half-life of the ADP-ribose polymer, which is subjected to degradation by poly(ADP-ribose) glycohydrolase (PARG) (Figure 1) [1]. Poly(ADP-ribosyl)ation and PARPs are involved in various cellular processes, including cell survival and death, transcription, DNA repair, telomere integrity and cell division. Accordingly, pharmacological inhibitors of PARP activity have proven to be useful in different pathological conditions [2].

PARPs constitute a superfamily of 17 members sharing a conserved catalytic domain that contains the PARP signature motif, a highly conserved sequence that forms the active site 1, 3, 4. Among these members, PARP-1 (113 kDa), the first PARP to be discovered, and PARP-2 (62 kDa) are so far the only PARP enzymes whose catalytic activity has been shown to be induced by DNA-strand interruptions [5]. Their targets are mainly involved in chromatin structure and DNA metabolism; they include histones, DNA repair proteins and transcription factors, as well as PARP-1 and PARP-2 themselves [1]. However, PARP-2 is less active than PARP-1, contributing only 5% to 10% of the total PARP activity in response to DNA damage [6].

Biochemical and genetic studies have provided strong support for key shared functions of PARP-1 and PARP-2 in the cellular response to DNA damage. Both proteins heterodimerise, share several common nuclear binding partners and have been described as contributors to single strand break repair/base excision repair (SSBR/BER) processes 6, 7. In addition, mice that are doubly deficient for Parp-1 (Parp-1−/−) and Parp-2 (Parp-2−/−) are not viable and die at the onset of gastrulation, demonstrating the crucial role of poly(ADP-ribosyl)ation during embryonic development [8]. However, PARP-1 and PARP-2 have different targets both in DNA and in proteins, suggesting that they might have specific functions, which have started to be identified (Table 1).

The aim of this review is to unravel the specific functions of PARP-2. Recent data describing specific roles of PARP-2 in genome surveillance will be discussed, as well as the emergence of specific spontaneous defects in infertility, impaired fat storage capacity and T lymphocyte development in Parp-2−/− mice. Understanding these physiological roles might provide invaluable clues to the rational development and exploitation of specific PARP-2 inhibitor drugs in a clinical setting and the design of new therapeutic approaches in different pathophysiological conditions, such as cancer and inflammation.

Section snippets

PARP-2, a DNA-damage dependent PARP

PARP-2 was discovered as a result of the presence of residual DNA-dependent PARP activity in Parp-1−/− mouse embryonic fibroblasts (MEFs) [5] and by screening the sequence databases 9, 10. The Parp-2 gene, located at position 14 q11.2 in human and 14 C1 in mouse, consists of 16 exons and 15 introns spanning ∼13 kb (Figure 2a). Interestingly, the N-terminal domain of murine PARP-2 (residues 1 to 65) contains a highly basic DNA-binding domain (DBD), nuclear localisation signal (NLS) and nucleolar

PARP-2 in genome surveillance and protection

Parp-2−/− mice, similarly to Parp-1−/− mice, display sensitivity to ionising radiation and alkylating agents, although to different extents, supporting a protective role for PARP-1 and PARP-2 with regard to cell survival and maintenance of genomic integrity but reflecting possible specific functions of both enzymes in these pathways [8]. The maintenance of genome integrity represents a fundamental and continuous challenge to every cell. Genomic instability, a hallmark of most cancers [16], can

Towards specific functions of PARP-2 in differentiation processes

Further characterisation of the Parp-2−/− mouse model has revealed the emergence of specific functions of PARP-2, but not of PARP-1, in various differentiation processes, including adipogenesis, spermatogenesis and T lymphocyte development (Figure 4) via at least two non-exclusive mechanisms: the regulation of transcription factors and the control of chromatin structure and/or function.

Role of PARP-2 in the inflammatory response

Although a large body of data has shown that PARP-1 deficiency results in a defective inflammatory response in different pathophysiological conditions, such as endotoxic shock, ischaemia and reperfusion injury, chronic colitis and acute pancreatitis 2, 59, 60, 61, little is known regarding the role of PARP-2 in inflammation and results are variable depending on the experimental model. Both PARP-1 transcription regulation associated with abnormalities in the expression of nuclear factor kappa-B

Prospects for targeting PARP-2

PARP inhibitors first emerged in the 1980s as potential chemotherapeutic targets in cancer [67], showing an exquisite cytotoxicity in proliferating cells, but only after treatment with genotoxic agents. As mentioned previously, PARP-1 and PARP-2 have a role in DNA repair, and PARP inhibitors can be used to suppress DNA repair and promote apoptosis in cells that are treated with certain anticancer agents. Three generations of inhibitors later, increased potency and suitable pharmacokinetic

Conclusions

Although PARP-1 and PARP-2 both participate in similar biological processes controlling genome integrity, biochemical and structural studies of PARP-2 increasingly predict that both proteins might act at distinct steps and/or interact with distinct protein partners. In addition, the spontaneous phenotype of impaired differentiation pathways observed in Parp-2−/− mice clearly assigns crucial and unique roles of PARP-2 in these events. The particular role of PARP-2 in the maintenance of

Acknowledgements

This manuscript is dedicated to the memory of Josiane Ménissier-de Murcia, who had a tremendous impact on the PARP field. Special thanks are addressed to Gilbert de Murcia for continuous support, Jean-Christophe Amé for helpful discussions and contribution to the illustrations and Nicola Curtin and Ruth Plummer for their advice on ongoing clinical trials. This work was supported by the Spanish Ministerio de Educación y Ciencia (M.E.C.) (grant BIO-2005–01393), Fundación Séneca (grants

Glossary

Centromere
the site of organisation of a kinetochore on mitotic chromosomes that facilitates attachment and alignment of chromosomes on spindle microtubules and is essential for accurate meiotic and mitotic segregation of chromosomes.
Heterochromatin
a highly condensed and transcriptionally less active form of chromatin that is found at defined sites, such as centromeres, silenced DNA elements or telomeres.
Homologous recombination (HR)
a mechanism for the repair of double-strand-DNA breaks that

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