doi:10.1016/j.jchromb.2005.01.022
Copyright © 2005 Elsevier B.V. All rights reserved.
Peptide profiling in epithelial tumor plasma by the emerging proteomic techniques
Emilia Caputoa, b, 1,
,
, Maria Luisa Lombardic, 1, Vincenza Luongoc, Ramy Moharramb, Pete Tornatored,
, Giuseppe Pirozzic, John Guardiolaa,
and Brian M. Martinb
aInstitute of Genetics and Biophysics—I.G.B., A.Buzzati-Traverso, CNR, Via G. Marconi 10, I-80125 Naples, Italy
bUnit on Molecular Structures, NIMH, 10 Center Drive Bldg103N309, Bethesda, MD 20892-1262, USA
cOncologia Sperimentale C-Immunologia Istituto Nazionale Tumori Fondazione G. Pascale, Via M. Semmola, 80131 Naples, Italy
dCiphergen Biosystems, Fremont, CA, USA
Received 2 July 2004;
accepted 24 January 2005.
Available online 12 February 2005.
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Abstract
The plasma peptide component (PPC) from ten melanoma (Mel), breast cancer (BC) and healthy individuals was examined by a combination of RP-HPLC, surface enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) and tandem mass spectrometry. A three peak pattern (2023, 2039, 2053.5 m/z) was primarily observed in melanoma. Two peaks (2236.1 and of 2356.3 m/z) were found only in BC samples. Fibrinogen alpha and inter-α-trypsin inhibitor heavy chain H4 fragments were absent in both tumor samples.
Keywords: Melanoma; Breast cancer; Plasma peptide component; SELDI-TOF MS
Abbreviations: SELDI-TOF MS, surface enhanced laser desorption/ionization time-of-flight mass spectrometry; CHCA, α-cyano-4-hydroxy-cinnamic acid; ACTH, adrenocorticotropic hormone; RT, retention time; CNC, composite normal control; PPC, plasma peptide component
Fig. 1. HPLC profiles of PPC from melanoma and healthy samples. Plasma filtrates from melanoma, Mel (—) and from healthy individuals, CNC (- - -) were loaded on a BetaBasic-18 HPLC column (A). The trace indicated the absorbance at 220 nm. The retention time (RT) of the eluted species were reported on the top and on the bottom of the chromatogram for melanoma and for healthy samples, respectively. The fractions, obtained by BetaBasic-18 HPLC, were analyzed by SELDI-TOF MS, as described in the text. The mass/charge (m/z) values of each detected species were reported (B, C).
Fig. 2. HPLC profiles and SELDI-TOF MS spectra of PPC from breast cancer and healthy samples. Plasma peptides from breast cancer, BC (—) and from healthy individuals, CNC (- - -) were loaded on a BetaBasic-18 HPLC column. The retention time (RT) of the eluted species were reported on the top and on the bottom of the chromatogram for BC and for healthy samples, respectively; SELDI-TOF MS of each fraction were reported in panels a–j.
Fig. 3. SELDI-TOF MS spectra of PPC from melanoma and healthy individual plasma. The fractions corresponding to Regions A and B, obtained by BetaBasic-18 HPLC of each plasma from melanoma and healthy individuals, were analyzed by SELDI-TOF MS. (A) is a representative SELDI profile from healthy (a) and melanoma (b) individuals for HPLC Region A. SELDI analysis of HPLC Region B is presented in B and C from healthy individuals (B) and melanoma individuals (C), respectively. Each melanoma and healthy individual was indicated with a M and N (followed by a number), respectively. (D) is a ‘box- and whiskers’ plot for marker candidates, obtained from the data analysis using Ciphergen Express software. The m/z and p-value are reported.
Table 1.
Sequences of the peptides from PPCs by MS/MS analysis
