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Information Processing Letters
Volume 92, Issue 2, 31 October 2004, Pages 57-63
 
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doi:10.1016/j.ipl.2004.06.019    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2004 Elsevier B.V. All rights reserved.

Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees

Atsuko YamaguchiCorresponding Author Contact Information, E-mail The Corresponding Author, Kiyoko F. AokiE-mail The Corresponding Author and Hiroshi MamitsukaE-mail The Corresponding Author

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, 611-0011, Japan

Received 29 September 2003; 
revised 18 June 2004. 
Communicated by K. Iwama. 
Available online 7 August 2004.

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Abstract

The maximum common subgraph problem is known to be NP-hard, although it has often been applied to various areas. In the field of molecular biology, we can reduce the problem space by analyzing the structures of chemical compounds. In doing so, we have found that the tree-width of chemical compounds are bounded by a constant, and that the possible spanning trees of any compound is polynomially bounded. We present a polynomial time algorithm for finding the maximum common connected induced subgraph of a degree-bounded partial k-tree and a connected graph, the number of whose possible spanning trees is polynomial.

Keywords: Computational complexity; Graph algorithms; Maximum common subgraph


 
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