Expression profile and differential regulation of the Human I-mfa domain-Containing protein (HIC) gene in immune cells
Introduction
HIC (Human I-mfa domain-Containing protein) is a 246 amino acid protein with a prominent cytoplasmic distribution [1]. The C-terminal domain of HIC encompasses a cysteine-rich region termed the I-mfa domain because of its 74% homology with the C-terminal domain of the inhibitor of MyoD family a (I-mfa) [1]. The I-mfa domains of both HIC and I-mfa are essential for their activities.
HIC is encoded by a gene located on the long arm of chromosome 7 and maps to the locus 7q31.1-q31.2, spanning a region of 100,000 kb. The HIC gene encompasses four exons and three introns; the ORF is encoded by all exons and starts within exon one, following an UTR of 263 nucleotides (Fig. 1A and B). Interestingly, this locus has been identified as a fragile region (FRA7G), which is associated with chromosomal instability [2], [3], [4]. Deletions in this region have been associated with a range of malignancies, including leukemia [2], [3], [4], [5], [6], [7], [8]. Furthermore, because of its location in a region frequently deleted in myeloid neoplasms, HIC has been considered as a strong candidate tumor suppressor gene (TSG) [5]. However, no mutations within the HIC coding sequence itself have been identified.
HIC displays a complex yet incompletely understood functional profile, but is generally described as a transcriptional regulator. Indeed, HIC was first identified as a protein that enhances Tax-mediated expression of HTLV-1 promoters and represses Tat-mediated expression of HIV-1 promoters [1]. Subsequently, it was demonstrated that HIC physically interacts with the viral transactivator, HIV-1 Tat, which results in Tat cytoplasmic sequestration and down-regulation of Tat-mediated transcription of the virus promoter [9], [10]. HIC has also been shown to interact with the Epstein-Barr viral protein RK-BARF0, although the functional relevance of this interaction has not been investigated [11]. In parallel, HIC has also been shown to interact with several cellular transcription factors, including Axin, cyclin T1 and TCF1, and to modulate their function and/or associated signaling pathways [10], [12], [13].
HIC was first cloned at the cDNA level and identified in the T-cell line MT-2 [1]. However, the protein exhibits a wide but specific tissue distribution. Northen Blot analyses have shown that in addition to prostate, uterus, and small intestine, HIC mRNA is expressed in human lymphoid organs including thymus, spleen and peripheral blood leukocytes but is almost absent in testis and colon [1]. End-point RT-PCR have shown that HIC is differentially expressed in various cell lines including cell lines of immune origin [13].
The precise function of HIC remains to be clarified. Nevertheless, the association of the HIC gene locus with myeloid neoplasms, its interactions with lymphotropic viruses such as EBV, HIV-1 and HTLV-1 and its expression in immune tissues suggest that HIC might have a modulatory role in immune cells. To further characterise HIC activity and its functional relationship with the immune system, we conducted this study which describes (i) HIC mRNA expression profiles in selected human primary immune cells (PBMCs and distinct subsets of PBMCs), (ii) analysis of the control of HIC immune cell expression at the epigenetic level in certain malignant states, as represented by B and T cell lines, and (iii) examination of how stimulation with IL-2, a potent immunomodulatory cytokine, can regulate the expression of HIC in immune cells.
Section snippets
In silico analysis of the HIC gene promoter
A genomic sequence spanning 1.2 kbp upstream and 483 bp downstream of the transcription start site (+1) of HIC gene (NC_000007.12) was retrieved from the NCBI human genome database (Fig. 1A and B). Transcription factor binding sites were identified by the TESS software (http://www.cbil.upenn.edu/cgi-bin/tess/tess?RQ = SEA-FR-Query) and combined search option TRANSFAC and Jaspar databases were selected [14]. We manually selected the transcription factors by using the following critical parameters:
In silico analysis of the HIC gene promoter
To examine if the promoter of HIC could determine the tissue and cell-specific regulated pattern of HIC gene expression, we analysed its promoter sequence for putative cis-regulatory elements. A sequence spanning 1.2 kbp upstream and 483 bp downstream of the transcription start site (+1) of the HIC gene was retrieved from the NCBI human genome database (NC_000007.12). Searches of transcription factor binding sites were performed using the combined search option of the TESS software, which
Discussion
To examine the relationship of HIC expression with immune function, we characterised HIC mRNA expression profiles in primary cells (PBMCs and distinct subsets of PBMCs) and cell lines. It could be shown that HIC expression is highly dynamic, and cell-type and environment specific. HIC gene expression levels changed significantly following stimulation by IL-2. Furthermore, we have provided evidence supporting a putative epigenetic control of HIC gene expression in specific immune cell lines.
Acknowledgement
This work was supported by the National Virus Reference Laboratory (NVRL), University College Dublin, Dublin, Ireland.
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