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doi:10.1016/j.csda.2006.09.035    
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Copyright © 2006 Elsevier B.V. All rights reserved.

Algorithms for compact letter displays: Comparison and evaluation

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Jens Gramma, Jiong Guob, Falk Hüffnerb, Corresponding Author Contact Information, E-mail The Corresponding Author, Rolf Niedermeierb, Hans-Peter Piephoc, E-mail The Corresponding Author and Ramona Schmida

aWilhelm-Schickard-Institut für Informatik, Universität Tübingen, Sand 13, D-72076 Tübingen, Germany

bInstitut für Informatik, Friedrich-Schiller-Universität Jena, Ernst-Abbe-Platz 2, D-07743 Jena, Germany

cFachgruppe Bioinformatik, Universität Hohenheim, D-70593 Stuttgart, Germany


Available online 19 October 2006.

Abstract

Multiple pairwise comparisons are one of the most frequent tasks in applied statistics. In this context, letter displays may be used for a compact presentation of results of multiple comparisons. A heuristic previously proposed for this task is compared with two new algorithmic approaches. The latter rely on the equivalence of computing compact letter displays to computing clique covers in graphs, a problem that is well-studied in theoretical computer science. A thorough discussion of the three approaches aims to give a comparison of the algorithms’ advantages and disadvantages. The three algorithms are compared in a series of experiments on simulated and real data, e.g., using data from wheat and triticale yield trials.

Keywords: Multiple pairwise comparison; Line display; NP-hard problem; Graph problem; Clique cover; Efficient algorithm

Article Outline

1. Introduction
2. Algorithms for CLD
2.1. Computational complexity theory
2.2. Equivalence of CLDs and clique cover
2.3. Insert–Absorb heuristic
2.4. Clique-Growing heuristic
2.5. Search-Tree algorithm
2.6. Sweeping
2.7. Comparison of methods
3. Experimental evaluation
3.1. Real-world data
3.2. Simulated data
3.3. Evaluations and recommendations
4. Conclusion
Acknowledgements
References





Corresponding Author Contact InformationCorresponding author. Tel.: +49 3641 9 46324; fax: +49 3641 9 46002.

 
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