Copyright © 2005 Elsevier Ltd All rights reserved.
Computer-aided design of non-nucleoside inhibitors of HIV-1 reverse transcriptase
Received 23 September 2005;
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Abstract
Design principles are delineated for non-nucleoside inhibitors for HIV-1 reverse transcriptase (NNRTIs). Simultaneous optimization of binding affinity for wild-type RT, tolerance for viral mutations, and physical properties is pursued. Automated lead generation with the growing program BOMB, Monte Carlo simulations with free-energy perturbation theory for lead optimization, and property analysis with QikProp are featured. An initial 30 μM lead has been optimized rapidly to the 10 nM level.
Keywords: NNRTI; Structure-based drug design; Anti-HIV drugs; Computer-aided drug design







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