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Bioorganic & Medicinal Chemistry Letters
Volume 16, Issue 3, 1 February 2006, Pages 663-667
 
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doi:10.1016/j.bmcl.2005.10.038    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2005 Elsevier Ltd All rights reserved.

Computer-aided design of non-nucleoside inhibitors of HIV-1 reverse transcriptase

William L. Jorgensena, Corresponding Author Contact Information, E-mail The Corresponding Author, Juliana Ruiz-Caroa, Julian Tirado-Rivesa, Aravind Basavapathrunib, Karen S. Andersonb and Andrew D. Hamiltona

aDepartment of Chemistry, Yale University, New Haven, CT 06520-8107, USA bDepartment of Pharmacology, Yale University School of Medicine, New Haven, CT 06520-8066, USA

Received 23 September 2005; 
accepted 11 October 2005. 
Available online 2 November 2005.

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Abstract

Design principles are delineated for non-nucleoside inhibitors for HIV-1 reverse transcriptase (NNRTIs). Simultaneous optimization of binding affinity for wild-type RT, tolerance for viral mutations, and physical properties is pursued. Automated lead generation with the growing program BOMB, Monte Carlo simulations with free-energy perturbation theory for lead optimization, and property analysis with QikProp are featured. An initial 30 μM lead has been optimized rapidly to the 10 nM level.

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Keywords: NNRTI; Structure-based drug design; Anti-HIV drugs; Computer-aided drug design

Article Outline

Design considerations
Computer-aided design
Activity results
Acknowledgements
References



 
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