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Bioorganic & Medicinal Chemistry
Volume 14, Issue 22, 15 November 2006, Pages 7563-7581
 
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doi:10.1016/j.bmc.2006.07.017    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2006 Elsevier Ltd All rights reserved.

Design, synthesis and evaluation of peptidomimetics based on substituted bicyclic 2-pyridones—Targeting virulence of uropathogenic E. coli

Veronica Åberga, , Magnus Sellstedta, , Mattias Hedenströma, Jerome S. Pinknerb, Scott J. Hultgrenb and Fredrik Almqvista, Corresponding Author Contact Information, E-mail The Corresponding Author

aOrganic Chemistry, Department of Chemistry, Umeå University, SE-90187 Umeå, Sweden bMolecular Microbiology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA

Received 17 March 2006; 
accepted 3 July 2006. 
Available online 14 August 2006.

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Abstract

Substituted bicyclic 2-pyridones, termed pilicides, are dipeptide mimetics that prevent pilus assembly in uropathogenic Escherichia coli. Here, we apply rational design to produce four classes of extended peptidomimetics based on two bioactive 2-pyridones. The key intermediate in the synthesis was an amino-functionalised 2-pyridone scaffold, which could be obtained via a mild and selective nitration and subsequent reduction. Procedures were then developed to further derivatize this amino-substituted core and a total of 24 extended peptidomimetics were synthesised and evaluated for chaperone affinity and in vivo antivirulence activity in P pili producing E. coli. Enhanced affinities for the target protein were observed within the generated set of compounds, while the ability to prevent pilus assembly in vivo was significantly decreased compared to the parent lead compounds. The results suggest that the limited in vivo potencies of the analogues are either uptake/distribution related or due to loss in binding specificity.

Graphical abstract

Efficient procedures to amino-substituted bicyclic 2-pyridone scaffolds have been developed. From these, peptidomimetics were prepared and evaluated as potential inhibitors of pilus assembly in Escherichia coli giving valuable structure–activity relationships.


Keywords: 2-Pyridone; Peptidomimetic; Antimicrobial; Pili

Article Outline

1. Introduction
2. Design and synthesis
2.1. Amino-substitution of the scaffold (E)
2.2. Tripeptidomimetics via couplings to aminated scaffold (A)
2.3. Backbone extensions by acylations and sulfonylations (B and C)
2.4. Aminocarbonylations (D)
3. Biological evaluation
4. Conclusions
5. Experimental
5.1. Synthesis of methyl esters 1011, 2023, 2833, 4049 and 6067
5.1.1. (3R)-8-Cyclopropyl-7-naphthalen-1-ylmethyl-6-nitro-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (20)
5.1.2. (3R)-7-Naphthalen-1-ylmethyl-6-nitro-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (21)
5.1.3. (3R)-6-Amino-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (22)
5.1.4. (3R)-6-Amino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (23)
5.1.5. (3R)-6-(2-Acetylamino-3-tert-butoxy-propionylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (28)
5.1.6. (3R)-6-(2-Acetylamino-3-tert-butoxy-propionylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (29)
5.1.7. (3R)-6-(2-Acetylamino-acetylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl- 5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (30)
5.1.8. (3R)-6-(2-Acetylamino-acetylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (31)
5.1.9. (3R)-6-(2-Acetylamino-propionylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (32)
5.1.10. (3R)-6-(2-Acetylamino-propionylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (33)
5.1.11. (3R)-8-Cyclopropyl-6-formylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (40)
5.1.12. (3R)-6-Formylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (41)
5.1.13. (3R)-6-Acetylamino-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (42)
5.1.14. (3R)-6-Acetylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (43)
5.1.15. (3R)-8-Cyclopropyl-6-isobutyrylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (44)
5.1.16. (3R)-6-Isobutyrylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (45)
5.1.17. (3R)-8-Cyclopropyl-6-methanesulfonylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (46)
5.1.18. (3R)-6-Methanesulfonylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (47)
5.1.19. (3R)-8-Cyclopropyl-6-[formyl-(propane-2-sulfonyl)-amino]-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (48)
5.1.20. 6-[Formyl-(propane-2-sulfonyl)-amino]-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (49)
5.1.21. (3R)-8-Cyclopropyl-6-methylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (64)
5.1.22. (3R)-6-Methylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (65)
5.1.23. (3R)-8-Cyclopropyl-6-isopropylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (66)
5.1.24. (3R)-6-Isopropylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid methyl ester (67)
5.2. General procedure for hydrolysis into lithium carboxylates 89, 2427, 3439, 5059 and 6871
5.2.1. (3R)-8-Cyclopropyl-7-naphthalen-1-ylmethyl-6-nitro-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (24)
5.2.2. (3R)-7-Naphthalen-1-ylmethyl-6-nitro-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (25)
5.2.3. (3R)-6-Amino-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (26)
5.2.4. (3R)-6-Amino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (27)
5.2.5. (3R)-6-(2-Acetylamino-3-hydroxy-propionylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (34)
5.2.6. (3R)-6-(2-Acetylamino-3-hydroxy-propionylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (35)
5.2.7. (3R)-6-(2-Acetylamino-acetylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (36)
5.2.8. (3R)-6-(2-Acetylamino-acetylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (37)
5.2.9. (3R)-6-(2-Acetylamino-propionylamino)-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (38)
5.2.10. (3R)-6-(2-Acetylamino-propionylamino)-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (39)
5.2.11. (3R)-8-Cyclopropyl-6-formylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (50)
5.2.12. (3R)-6-Formylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (51)
5.2.13. (3R)-6-Acetylamino-8-cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (52)
5.2.14. (3R)-6-Acetylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (53)
5.2.15. (3R)-8-Cyclopropyl-6-isobutyrylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (54)
5.2.16. (3R)-6-Isobutyrylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (55)
5.2.17. (3R)-8-Cyclopropyl-6-methanesulfonylamino-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid (56)
5.2.18. (3R)-6-Methanesulfonylamino-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid (57)
5.2.19. (3R)-8-Cyclopropyl-7-naphthalen-1-ylmethyl-5-oxo-6-(propane-2-sulfonylamino)-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid (58)
5.2.20. 7-Naphthalen-1-ylmethyl-5-oxo-8-phenyl-6-(propane-2-sulfonylamino)-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-carboxylic acid (59)
5.2.21. (3R)-8-Cyclopropyl-6-methylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (68)
5.2.22. (3R)-6-Methylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (69)
5.2.23. (3R)-8-Cyclopropyl-6-methylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-2,3-dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (70)
5.2.24. (3R)-6-Isopropylcarbamoyl-7-naphthalen-1-ylmethyl-5-oxo-8-phenyl-2,3- dihydro-5H-thiazolo[3,2-a]pyridine-3-lithium carboxylate (71)
5.3. Computational procedures
5.4. Affinity measurements using 1H relaxation-edited NMR spectroscopy
5.5. In vivo activity evaluated with haemagglutination
Acknowledgements
Supplementary data
References










Bioorganic & Medicinal Chemistry
Volume 14, Issue 22, 15 November 2006, Pages 7563-7581
 
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