Elsevier

Acta Astronautica

Volume 161, August 2019, Pages 75-86
Acta Astronautica

Evaluation of osteoclast-derived exosomal miRNA under simulated microgravity conditions using next-generation sequencing

https://doi.org/10.1016/j.actaastro.2019.04.045Get rights and content

Highlights

  • Osteoclast-derived exosomal miRNA profile was revealed in stimulated microgravity.

  • Next-generation sequencing obtained 116 differentially expressed exosomal miRNAs.

  • Candidate target genes of bone-related miRNAs were analyzed by bioinformatics tool.

  • GO and KEGG pathway of Candidate target genes were performed by online databases.

  • The validation of the selected miRNAs was confirmed using qPCR assay.

Abstract

The important role of osteoclast-derived exosomes in bone remodeling of microgravity-induced osteoporosis has been validated. However, the underlying mechanism remains unclear. A set of total miRNAs expressed in osteoclast-derived exosomes may configure the specific signature of the bone tissue in the microgravity condition. This study aimed to investigate the miRNA expression profile of osteoclast-derived exosomes in simulated microgravity using next-generation sequencing. Cell culture supernatant of osteoclasts under normal gravity conditions and simulated microgravity conditions were harvested for the extraction of exosomes and exosomal miRNAs. Our results revealed that 116 aberrantly expressed exosomal miRNAs including 29 up-regulated miRNAs and 87 down-regulated miRNAs were found in the simulated microgravity group compared to the normal gravity control group. The candidate target genes and signaling pathways of 15 selected differentially expressed miRNAs were identified via target genes prediction, GO and KEGG analyses. Furthermore, miRNA qPCR assay was performed to validate the RNA sequencing results. Collectively, these analyses provide insight regarding the effects of microgravity in modulating the extracellular miRNA profile through exosomes released from osteoclasts. The selective packaging of miRNA cargo in exosomes under microgravity could facilitate the development of promising and effective targets for the diagnosis, prevention, and treatment of microgravity-induced osteoporosis.

Introduction

During space flight, it has been documented that astronauts suffer from progressive bone loss, which has become a major concern to their health [[1], [2], [3]]. The bone mass of astronauts has revealed a significant reduction in their total bone mineral density with a loss of 1–2% per month under microgravity conditions [4]. The potential mechanism of space bone loss is thought to be the result of an uncoupling of bone remodeling in microgravity [5,6]. Bone remodeling relies on the tightly regulated communication between bone-forming osteoblasts and bone-resorptive osteoclasts. Several studies have focused on the functional alteration of osteoclasts and osteoblasts in microgravity [[7], [8], [9], [10], [11]].

Numerous studies have demonstrated that microgravity can directly stimulate osteoclastogenesis and increase bone resorption in space or in a simulated microgravity environment [[12], [13], [14]]. These findings indicate that osteoclasts and their precursors are the direct targets of mechanical forces. However, the cellular and molecular mechanisms of osteoclast behavior in microgravity need to be further elucidated. Bone cell communication is dependent on the transportation of key bone cell-derived factors, including membrane-bound ligands, receptors, diffusible paracrine factors and extracellular vesicles (EVs) [[15], [16], [17], [18], [19]]. EVs are common membrane-surrounded structures released by various mammalian cells in an evolutionarily conserved manner [20]. The EV class includes exosomes, microvesicles, and apoptotic bodies [21,22]. Exosomes, nano-sized extracellular vesicles (30–150 nm), are released from various cells in response to the surrounding environment, external stimuli, and physiological status of the cell, and play a potential role in intercellular communication [23,24]. Moreover, exosomes have been considered a critical factor in bone remodeling [25,26]. Bone cell-derived exosomes carry specific biochemical cargo, encompassing bioactive proteins, lipids, metabolites, mRNA, microRNAs (miRNAs) and many other non-coding RNAs, to regulate the functions of target cells [27]. Recent studies have demonstrated that osteoclast-derived exosomes represent a novel approach for osteoclast-osteoblast communication by delivering genetic information for bone remodeling [25,28]. Previous work by our group has shown that osteoclast-derived exosomes have a negative-feedback mechanism between osteoclasts and osteoblasts under simulated microgravity conditions [29].

miRNAs are a superfamily of small single-stranded non-coding RNAs (approximately 20–25 nucleotides in length) that can negatively regulate gene expression at the post-transcriptional level by binding to the 3′-untranslated region (3′-UTR) of target mRNAs, causing translational repression of mRNA [30]. miRNAs can be released into the microenvironment via exosomes and exert important functions in cellular communication [31]. To date, several studies have suggested that miRNAs, such as miR-214, miR-148a, miR-680 and miR-1192, are associated with bone remodeling by regulating the proliferation and differentiation of osteoclasts and osteoblasts [26,28,32,33]. Therefore, the transfer of miRNAs by osteoclast-derived exosomes is specifically important for osteoclast-osteoblast communication. However, the role and miRNA expression profiles of osteoclast-derived exosomes in microgravity remain largely unknown.

Based on these results, we hypothesized that miRNAs derived from osteoclasts might represent an important role in osteoblast-osteoclast communication under microgravity conditions. In this study, the random positioning machine (RPM) was used as a ground-based model to simulate microgravity. Exosomes from RAW264.7 cell-derived osteoclasts were obtained from this RPM system. By using miRNA next-generation sequencing (NGS), we further evaluated exosomal miRNA profiles under microgravity conditions compared with normal gravity conditions. The purpose of this study was to explore the expression patterns of osteoclast-derived exosomal miRNAs under microgravity conditions. This work may provide new insights into the molecular mechanisms of bone loss in microgravity and therapeutic targets to prevent osteoporosis in astronauts during space flight missions.

Section snippets

The facility of a random positioning machine (RPM) system for cell culture

The RAW264.7 murine osteoclastic precursor cell line [34] was used in this study and purchased from the Cell Collection Center of Shanghai, which originally obtained the cell line from the American Type Culture Collection (Manassas, VA, USA). For cell culture, osteoclastic RAW264.7 cells were maintained in α-minimum essential medium (α-MEM; Gibco, Carlsbad, USA) supplemented with 2 mmol/L l-glutamine, 2.2 g/L sodium bicarbonate, 100 units/ml penicillin, 0.1 mg/mL streptomycin and 10% (v/v)

Characterization of osteoclast-derived exosomes

Murine osteoclastic precursor RAW264.7 cells were seeded onto carrier slides for their differentiation until reaching maturity in the normal conditions, then put the slides into the dedicated cell culture flasks and fixed the flasks in the RPM system (Fig. 1A). In this study, we applied an ultracentrifugation method to obtain CON and RPM exosomes from cell culture medium. Exosomes secreted by osteoclasts under normal conditions and in the RPM were successfully isolated and fully characterized

Discussion

Osteoclast-derived exosomes from the RPM group can obstruct the differentiation of MC3T3-E1 cells by interfering with the Wnt/β-catenin signaling pathway, which plays an essential role in the regulation of bone remodeling in a microgravity environment [29]. Most importantly, the reduced bone formation is the primary characteristic of bone loss during space flight, and miRNAs have been demonstrated to regulate gene expression at the post-transcriptional level. These miRNAs which can regulate

Declaration of interest statement

The authors report no conflicts of interest.

Acknowledgments

We gratefully acknowledge financial support from the National Natural Science Foundation of China (NSFC) (31500688, 81502465, 81700823 and 51477141), the Fundamental Research Funds for the Central Universities (3102016OQD042), the Seed Foundation of Innovation and Creation for Graduate Students in Northwestern Polytechnical University (Grant No.ZZ2019272).

References (75)

  • R. Bhushan et al.

    MiR-181a promotes osteoblastic differentiation through repression of TGF-β signaling molecules

    Int. J. Biochem. Cell Biol.

    (2013)
  • Y.J. Choi et al.

    Deficiency of DGCR8 increases bone formation through downregulation of miR-22 expression

    Bone

    (2017)
  • M. Horak et al.

    Muscle-specific microRNAs in skeletal muscle development

    Dev. Biol.

    (2016)
  • M.J. Millan

    MicroRNA in the regulation and expression of serotonergic transmission in the brain and other tissues

    Curr. Opin. Pharmacol.

    (2011)
  • Y. Zhang et al.

    Transcriptomics, NF-ΚB pathway, and their potential spaceflight-related health consequences

    Int. J. Mol. Sci.

    (2017)
  • M. Zayzafoon et al.

    Microgravity: the immune response and bone

    Immunol. Rev.

    (2005)
  • R. Tamma et al.

    Microgravity during spaceflight directly affects in vitro osteoclastogenesis and bone resorption

    FASEB J.

    (2009)
  • W. Xiao et al.

    Bone remodeling under pathological conditions

    Front. Oral Biol.

    (2015)
  • Z. Sun et al.

    Simulated microgravity reduces intracellular‐free calcium concentration by inhibiting calcium channels in primary mouse osteoblasts

    J. Cell. Biochem.

    (2018)
  • M. Gioia et al.

    Simulated microgravity induces a cellular regression of the mature phenotype in human primary osteoblasts

    Cell Death Dis.

    (2018)
  • A. Michaletti et al.

    Effects of microgravity on osteoblast mitochondria: a proteomic and metabolomics profile

    Sci. Rep.

    (2017)
  • S. Shanmugarajan et al.

    Combined effects of simulated microgravity and radiation exposure on osteoclast cell fusion

    Int. J. Mol. Sci.

    (2017)
  • E.A. Blaber et al.

    Microgravity induces pelvic bone loss through osteoclastic activity, osteocytic osteolysis, and osteoblastic cell cycle inhibition by CDKN1a/p21

    PLoS One

    (2013)
  • M. Chatani et al.

    Microgravity promotes osteoclast activity in medaka fish reared at the international space station

    Sci. Rep.

    (2015)
  • R. Saxena et al.

    Modeled microgravity and hindlimb unloading sensitize osteoclast precursors to RANKL-mediated osteoclastogenesis

    J. Bone Miner. Metab.

    (2011)
  • R. Tamma et al.

    Osteoblast and osteoclast crosstalks: from OAF to Ephrin

    Inflamm. Allergy - Drug Targets

    (2012)
  • K. Matsuo

    Cross-talk among bone cells

    Curr. Opin. Nephrol. Hypertens.

    (2009)
  • P. Yin et al.

    Exosome-mediated genetic information transfer, a missing piece of osteoblast-osteoclast communication puzzle

    Front. Endocrinol.

    (2017)
  • Y. Xie et al.

    The roles of bone-derived exosomes and exosomal microRNAs in regulating bone remodelling

    J. Cell Mol. Med.

    (2017)
  • C. He et al.

    Exosome theranostics: biology and translational medicine

    Theranostics

    (2018)
  • G. Van Niel et al.

    Shedding light on the cell biology of extracellular vesicles

    Nat. Rev. Mol. Cell Biol.

    (2018)
  • J. Burke et al.

    Stem cell-derived exosomes: a potential alternative therapeutic agent in orthopaedics

    Stem Cell. Int.

    (2016)
  • N. Iraci et al.

    Focus on extracellular vesicles: physiological role and signalling properties of extracellular membrane vesicles

    Int. J. Mol. Sci.

    (2016)
  • F.L. Yuan et al.

    Osteoclast-derived Extracellular vesicles: novel regulators of osteoclastogenesis and osteoclast-osteoblasts communication in bone remodeling

    Front. Physiol.

    (2018)
  • M. Liu et al.

    Emerging role of extracellular vesicles in bone remodeling

    J. Dent. Res.

    (2018)
  • M.L. Rodrigues et al.

    Vesicular trans-cell wall Transport in fungi: a mechanism for the delivery of virulence-associated macromolecules?

    Lipid Insights

    (2008)
  • W. Sun et al.

    Osteoclast-derived microRNA-containing exosomes selectively inhibit osteoblast activity

    Cell Discov.

    (2016)
  • Cited by (8)

    • Simulated microgravity promotes oxidative stress-induced apoptosis in ARPE-19 cells associated with Nrf2 signaling pathway

      2022, Acta Astronautica
      Citation Excerpt :

      Until the density of cells reached 70–80%, the carrier slides covered with cells were inserted into the rotary box for random rotation treatment. The rotary box is a new cell culture device applied for by our research group in 2010, which has been described in previous studies [17]. The cells (1.8 × 107) were inoculated in a six-well plate (2 × 104 cells/well) containing carrier slides and precultured in a cell incubator at 37 °C and 5% CO2.

    • Knockdown of MACF1 inhibits the migration and cytoskeletal arrangement of pre-osteoclasts induced by simulated microgravity

      2022, Acta Astronautica
      Citation Excerpt :

      Simulated microgravity can promote osteoclast differentiation by regulating the fusion and autophagy of pre-osteoclasts [13–15]. Therefore, osteoclasts and their precursors are direct targets of microgravity-dependent bone loss [35,36]. However, the effect of microgravity on the migration of pre-osteoclasts remains unclear.

    • Is oral health affected in long period space missions only by microgravity? A systematic review

      2020, Acta Astronautica
      Citation Excerpt :

      These findings indicate that osteoclasts end their precursors are the direct targets of mechanical forces. However, the underlying mechanism remains unclear [40]. In this sense, there are results that determine moderate and severe periodontitis were found to have 1.56, 2.09 and 2.08 times the risk of osteoporosis respectively compared to patients without periodontitis.

    View all citing articles on Scopus
    1

    These authors contributed equally to this study.

    View full text