Elsevier

Ultramicroscopy

Volume 80, Issue 4, December 1999, Pages 255-269
Ultramicroscopy

The effect of mechanical vibration and drift on the reconstruction of exit waves from a through focus series of HREM images

https://doi.org/10.1016/S0304-3991(99)00116-3Get rights and content

Abstract

Experimental HREM images can show a limited resolution as a result of mechanical vibration and drift. In this paper the effect of such mechanical vibrations on the accuracy of the through focus exit wave reconstruction method is investigated for different thicknesses of a test structure of La3Ni2B2N3. A through-focus series of HREM images for this structure is simulated for different kinds of mechanical vibration corresponding to an information limit g of about 7 nm−1: (1) no mechanical vibration, (2) isotropic mechanical vibration, and (3) several anisotropic mechanical vibrations. From these through-focus series the reconstructed exit wave is calculated (Ultramicroscopy 64 (1996) 109). The above isotropic and anisotropic mechanical vibrations have a large effect on the reconstructed exit waves when compared with the reconstructed exit wave without mechanical vibration, i.e. the range of amplitudes and phases in a reconstructed exit wave decreases and the background intensity increases. The initial thickness and orientation can be obtained using a least-squares refinement procedure (Acta Crystallogr. A 54 (1998) 91) when there is no mechanical vibration present. In the case of isotropic or anisotropic vibration, the refined thickness and orientation are likely to give wrong results depending on the size of the vibrations and on the number of significant reflections (which is related to the size of the unit cell, the thickness and the misorientation).

Introduction

Currently, interest has revived in through-focus exit-wave reconstruction as a method to extract as much information as possible from a focal series of HREM images [1], [2]. The through-focus exit-wave reconstruction (TF-EWR) uses the focus dependence of the image distortion by the electron microscope to restore the distortion of the microscope optics. Using algorithms developed by Van Dyck [2] and Coene [1], all useful information is extracted from a series of high-resolution electron microscope images taken at different defocus values with known focus increments. The result is the exit wave function — or in short: exit wave — which contains amplitude as well as phase information up to the information limit of the microscope.

The exit wave is complex; consequently, it contains amplitude and phase. One of the advantages is that one can obtain information about the local crystal orientation from such complex exit waves [3]. This misorientation can be deduced from the Fourier transform of a given exit wave, since unlike for real images, the absolute value of the Fourier transform is not centrosymmetric. Given the differences between the symmetry-related reflections (including g and g), the misorientation can be determined in a straightforward way. Knowledge of the crystal misorientation is a necessary tool for very precise determinations of atom positions at for instance grain boundaries. Moving the electron beam in nanodiffraction mode, it is almost always observed that — although the crystal is well aligned according to the selected area diffraction — the required orientation is almost never exactly obtained. Fluctuations in orientation of 1–2° over short distances (10–50 nm) should be considered to be the rule rather than the exception.

The misorientation can be refined using a recently developed least-squares refinement procedure in which the dynamical diffraction is taken into account [4]. In this procedure (MSLS) the multislice algorithm is combined with a least-squares refinement algorithm. Normally, the reflections of the diffraction pattern are used as a data set. Alternatively, the Fourier components of the exit wave can be used. Apart from the refinement of the crystal (mis-) orientation, the MSLS program allows for the refinement of the thickness as well as the atomic positions. An essential requirement of the refinement is that the exit wave is reconstructed as accurately as possible. Since, in particular, the reflections with a high scattering angle are susceptible to specimen tilts, it is essential to determine these reflections very accurately, which implies that all damping terms have to be well accounted for.

The resolution of HREM images is damped by several effects as was already described by Glaeser [5]. In the first place, it is damped by the chromatic aberrations. In the TF-EWR, one corrects for the damping envelope corresponding to the chromatic aberrations. The result is an enhancement of the high-frequency components up to a certain frequency which results in a top hat-like aperture function in Fourier space. In the second place, the modulation transfer function of the CCD camera results in a damping. This modulation transfer function can be measured and is included in the TF-EWR software package. In the third place, the HREM images are damped by the mechanically induced specimen vibrations, in short: mechanical vibrations. In the fourth place, stray fields result in a loss of high-frequency information. Their effect on the HREM images is similar to that of the mechanical vibration. Often the damping envelope of the mechanical vibrations is anisotropic.

A distinction can be made between vibrational damping of linear and non-linear interaction terms. The non-linear terms result from an interaction between two diffracted beams, e.g. frequencies g and g give rise to the non-linear frequency 2g [6]. The vibrational damping affects the non-linear interaction terms particularly strong since these terms generally expand further into Fourier space (larger frequencies). The non-linear interaction terms are not taken into account in the paraboloid part of exit wave reconstruction (PAM method) but they are used in the maximum likelihood (MAL) part of the reconstruction [6]. Consequently, if these terms are significantly damped by the mechanical vibration of the specimen, the exit wave is unfaithfully reconstructed. The effect of the mechanical damping can be appreciated from Fig. 1 which shows simulated HREM images with and without an isotropic specimen vibration damping of 0.064 nm. In the fourth place, the specimen drift during the recording of a HREM image results in a loss of resolution, except in the direction perpendicular to the drift if the drift is only in one direction. The specimen drift can roughly be estimated from the image shift of two consecutive images.

The specimen vibration and the specimen drift are not yet included in the TF-EWR. In order to evaluate the necessity of including such mechanical vibrations in the reconstruction procedure, we have performed a number of calculations in which the degree of mechanical vibration in the calculated HREM images is varied. These HREM images are subsequently used in a TF-EWR after which the intensities and phases of Fourier transform are compared with those of the original exit wave. It is shown in this paper that it is essential to take the specimen vibration into account. For large mechanical vibrations, the vibration must already be taken into account in the TF-EWR, whereas for smaller mechanical vibrations it is (sometimes) possible to correct the reconstructed exit wave a posteriori for the mechanical vibration.

Section snippets

Theory

Specimen vibration and specimen drift are comparable kinds of mechanical vibration. Both mechanical vibrations cause image information to be spread out over an area that has the size of the vibration and drift distances. The spread out of information destroys the higher frequencies (g large) which have a wavelength smaller than the distances over which the mechanical vibrations occur if the image recording time is much larger than the vibration frequency.

The mechanical vibration can be modelled

Simulation parameters

The effects of specimen vibration and drift on the reconstructed exit wave are studied for the La3Ni2B2N3 structure with space group I4/mm and axes a=0.373 nm, c=2.067 nm (see Table 1). The axes used in the simulations are slightly modified (a=0.4 nm and c=1.6 nm) compared to the real unit cell determined by Zandbergen et al. [8], [9] in order to facilitate the image simulations. The incident beam direction is the [1 0 0] direction. The modification of the unit cell has no significant influence on

R-value of the reconstructed exit waves

After the image calculation and the TF-EWR, a certain number of characteristics of the reconstructed exit wave were determined which are shown in Table 3. The goodness of the reconstructed exit wave is indicated by the mean squared error/full field (MSE). For experimental images an MSE of 0.01 is good [program specification] when 20 images are used. All the reconstructed exit waves in Table 3 have a value lower or comparable to 0.01.

The agreement between the original exit wave and the

Actual mechanical vibration in our Philips CM30ST-FEG

The Fourier transform of an experimental image of La3Ni2B2N3 at a defocus value of about −100 nm (see Fig. 4), shows that the information does not extend much further than 0.10 nm in one direction and even ends at 0.14 nm in the other direction. From the focal spread (5.0 nm) and the Cs (1.3 mm) of our Philips CM30-ST electron microscope, the information limit is calculated to be 10 nm−1. For this value of the information limit, non-linear frequencies up to 0.05 nm could be visible because the

Conclusion

It has been shown that the effect of mechanical damping on simulated images can be quite large, and that the reconstructed exit wave is less reliable because the present software for exit wave reconstruction from a through focus series does not take into account the mechanical vibration. It is not always possible to correct the reconstructed exit wave a posteriori for realistic specimen thicknesses. For smaller values of the specimen thickness, an a posteriori correction is, however, possible.

Acknowledgements

The authors thank Dr. A. Thust for fruitful discussions.

References (15)

  • W.M.J. Coene et al.

    Ultramicroscopy

    (1996)
  • A.F. de Jong et al.

    Ultramicroscopy

    (1993)
  • A. Thust et al.

    Ultramicroscopy

    (1996)
  • A. Thust et al.

    Ultramicroscopy

    (1996)
  • M.J. Hÿtch et al.

    Ultramicroscopy

    (1994)
  • D. Tang et al.

    Ultramicroscopy

    (1996)
  • H. Lichte

    Ultramicroscopy

    (1986)
There are more references available in the full text version of this article.

Cited by (3)

  • Phase measurement error in summation of electron holography series

    2014, Ultramicroscopy
    Citation Excerpt :

    We take this approach because while techniques have been developed to extract the complete drift kernel they generally require a high signal-to-noise ratio beyond what is achieved in electron holography due to the use of blind deconvolution methods [39,40,41] or use a sensor to track and estimate the motion [42]. A third component of motion in the TEM is oscillations with high-frequency relative to the exposure time, such as the ubiquitous 60 Hz disturbance [43,44]. We do not account for the high-frequency MTF because it does not worsen with increasing exposure time.

  • Determination of the orientation in small areas of the exit wave

    2001, Ultramicroscopy
    Citation Excerpt :

    In addition, the Fourier transforms of the HREM images of the through-focus series used for the reconstructed exit wave show that the information limit does not have the same value in all directions, it has an ellipsoid shape. This anisotropy in the information limit must be taken into account as well, as shown by Bokel et al. [9]. We observed a similar information limit and anisotropy with this microscope for a wide range of specimens.

View full text