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Theoretical Computer Science
Volume 306, Issues 1-3, 5 September 2003, Pages 101-112
 
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doi:10.1016/S0304-3975(03)00214-7    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2003 Elsevier B.V. All rights reserved.

Watson–Crick D0L systems: generative power and undecidable problems

Petr SosíkE-mail The Corresponding Author

Institute of Computer Science, Silesian University, 74601, Opava, Czech Republic

Received 1 November 2001; 
revised 11 July 2002; 
accepted 6 March 2003;
Communicated by M. Margenstern 
Available online 16 April 2003.

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Abstract

The properties of Watson–Crick D0L system, a language–theoretical formalism inspired by natural DNA processing, are studied. The model incorporates the iterated D0L-like morphism and the DNA complementarity principle represented by a letter-to-letter morphism. These two morphisms are connected by a natural condition called the trigger.

We show first that this very simple model has rather unexpected power; it can closely and simply simulate any Minsky register machine. As a consequence, any recursively enumerable language can be obtained as a projection of the language of some standard Watson–Crick D0L system. Finally, we show that the graph reachability problem, equivalence problems and some other problems of standard Watson–Crick D0L systems are undecidable.

Author Keywords: Lindenmayer system; Watson–Crick complementarity; DNA computing

Mathematical subject codes: 68Q50; 68Q22


Theoretical Computer Science
Volume 306, Issues 1-3, 5 September 2003, Pages 101-112
 
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