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Theoretical Computer Science
Volume 302, Issues 1-3, 13 June 2003, Pages 401-416
 
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doi:10.1016/S0304-3975(02)00861-7    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2002 Published by Elsevier Science B.V.

Generalizations of suffix arrays to multi-dimensional matrices

Dong Kyue Kima, 1, Yoo Ah Kimb and Kunsoo ParkCorresponding Author Contact Information, E-mail The Corresponding Author, c, 2

a School of Electrical and Computer Engineering, Pusan National University, Pusan 609-735, South Korea b Department of Computer Science, University of Maryland, College Park, MD 20742, USA c School of Computer Science and Engineering, Seoul National University, Seoul 151-742, South Korea

Received 28 September 2001; 
revised 1 October 2002; 
accepted 21 October 2002;
Communicated by A. Apostolico 
Available online 17 December 2002.

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Abstract

We propose multi-dimensional index data structures that generalize suffix arrays to square matrices and cubic matrices. Giancarlo proposed a two-dimensional index data structure, the Lsuffix tree, that generalizes suffix trees to square matrices. However, the construction algorithm for Lsuffix trees maintains complicated data structures and uses a large amount of space. We present simple construction algorithms for multi-dimensional suffix arrays by applying a new partitioning technique to lexicographic sorting. Our contributions are the first efficient algorithms for constructing two-dimensional and three-dimensional suffix arrays directly.

Author Keywords: Index data structure; Suffix array; Multi-dimensional matrices; Pattern retrieval


 
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