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Advances in Applied Microbiology
Volume 61, 2007, Pages 307-346
 
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doi:10.1016/S0065-2164(06)61009-5    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2006 Elsevier Inc. All rights reserved.

Bacterial Cycling of Methyl Halides

Hendrik Schäfer*, Laurence G. Miller, Ronald S. Oremland and J. Colin Murrell*

*Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom US Geological Survey, Menlo Park, California 94025

Available online 18 September 2007.

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Article Outline

I. Introduction
A. Role of Methyl Halides in Atmospheric Chemistry and as Ozone-Depleting Compounds
B. Biogeochemical Cycle of Monohalomethanes
C. Anthropogenic Sources
D. Natural Chemical Sources and Sinks
E. Natural Biological Sources
F. Natural Biological Sinks
G. Stable Isotope Mass Balances and Fractionation
II. Methyl Halide-Degrading Organisms
A. Bacterial Degradation of Methyl Halides by Methanotrophs and Nitrifiers
B. Diversity and Distribution of Bacteria Capable of Growth on Methyl Halides as a Carbon and Energy Source
1. Isolates from Activated Sludge
2. Soil and Freshwater Isolates
3. Marine Methyl Halide Utilizers
III. Biochemistry and Genetics of Methyl Halide Degradation
A. Metabolism of Methyl Halides by Bacterial Isolates
B. The CmuA Pathway of Methyl Halide Degradation in M. chloromethanicum Strain CM4
1. MeCl Metabolism in A. lissarensis CC495
C. Cloning and Sequencing of cmu Gene Clusters
D. Mutational and Transcriptional Analysis of cmu Genes of H. chloromethanicum CM2
E. Evidence for Operation of the CmuA Pathway in MeCl- and MeBr-Degrading Bacterial Isolates
F. Alternative Methyl Halide Degradation Pathways
IV. Microbial Ecology of Methyl Halide-Degrading Bacteria
A. Development of Functional Gene Markers for CmuA Pathway Methylotrophs
B. Stable Isotope Probing of Methyl Halide Degradation in Soils
1. Stable Isotope Probing of Agricultural Soils
2. Stable Isotope Probing of Woodland and Forest Soils
C. Marine Methyl Halide Degradation
V. Potential Applications for Bioremediation Using Methyl Halide-Oxidizing Bacteria
A. Reducing Fugitive MeBr Emissions
B. Previous Efforts to Reduce MeBr Emissions
C. Bioremediation Using Methyl Halide-Oxidizing Bacteria
1. Direct Application of Methylotrophic Bacteria to Soil
2. Using Bacteria to Remove MeBr from the Waste Stream of Contained Fumigations
VI. Outlook
A. Genomics of Methyl Halide-Degrading Bacteria
B. Contribution of Alternative Pathways of Methyl Halide Degradation
C. Evolutionary Aspects and Role of Methyl Halides as Substrates in the Environment
Acknowledgements
References







 
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