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Information Processing Letters
Volume 54, Issue 2, 28 April 1995, Pages 85-92
 
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doi:10.1016/0020-0190(95)00007-Y    How to Cite or Link Using DOI (Opens New Window)
Copyright © 1995 Published by Elsevier Science B.V.

Approximately matching context-free languages

Gene MyersE-mail The Corresponding Author, 1

Department of Computer Science, University of Arizona, Tucson AZ 85721, USA

Received 14 July 1994; 
revised 23 December 1994. 
Communicated by G. Andrews 
Available online 4 April 2000.

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Abstract

Given a string w and a pattern p, approximate pattern matching merges traditional sequence comparison and pattern matching by asking for the minimum difference between w and a string exactly matched by p. We give an O(PN2(N + log P)) algorithm for approximately matching a string of length N and a context-free language specified by a grammar of size P. The algorithm generalizes the Cocke-Younger-Kasami algorithm for determining membership in a context-free language. We further sketch an O(P5N88p) algorithm for the problem where gap costs are concave and pose two open problems for such general comparison cost models.

Author Keywords: Design of algorithms; Pattern matching; Sequence comparison

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