Abstract
Ebola and Dengue are the critical diseases caused by RNA viruses, especially in the tropical parts of the globe, including Asia and Africa, and no prominent therapeutic options are available so far. Here, an effort was made to evaluate the efficacy of black pepper (Piper nigrum L.) alkaloid Piperine as a potential drug through computational docking simulation. Eight structurally essential proteins of Dengue and Ebola virus were selected as in silico docking targets for Piperine. Absorption, Distribution, Metabolism, and Excretion profile showed that Piperine was safe and possessed significant drug-like properties. Molecular dynamic simulation and binding free energy calculation showed that Piperine could inhibit Methyltransferase (PDB id 1L9K) of Dengue and VP35 Interferon Inhibitory Domain (PDB id 3FKE) of Ebola virus in comparison with the commercial antiviral Ribavirin. Furthermore, statistical analysis based on multivariate and clustering approaches revealed that Piperine had more affinity towards viral proteins than that of Ribavirin.
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Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, et al. The protein data bank. Acta Crystallogr Sect D: Biol Crystallogr. 2002;58:899–907.
Bhatt S, Gething PW, Brady OJ, Messina JP, Farlow AW, Moyes CL, et al. The global distribution and burden of Dengue. Nature. 2013;496:504–7.
Chen SL, Yu H, Luo HM, Wu Q, Li CF, Steinmetz A. Conservation and sustainable use of medicinal plants: problems, progress, and prospects. Chin Med. 2016;11:37.
Daina A, Michielin O, Zoete V. SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules. Sci Rep. 2017;7:42717.
de Oliveira AS, da Silva ML, Oliveira AFCS, da Silva CC, Teixeira RR, De Paula SO. NS3 and NS5 proteins: important targets for anti-dengue drug design. J Braz Chem Soc. 2014;25:1759–65.
Diaz LX, Ortega JO, Lopez KAL, Garcia IV, Gutierrez JLC. 2526. Side effects of antiretroviral therapy in children with HIV in a REFERRAL Center in Mexico. Open Forum Infect Dis. 2019;6:878.
Du X, Zuo X, Meng F, Wu F, Zhao X, Li C, et al. Combinatorial screening of a panel of FDA-approved drugs identifies several candidates with anti-Ebola activities. Biochem Biophys Res Commun. 2020;522:862–8.
Egloff M-P, Benarroch D, Selisko B, Romette J-L, Canard B. An RNA cap (nucleoside-2′-O-)-methyltransferase in the avivirus RNA polymerase NS5: crystal structure and functional characterization. EMBO J. 2002;21:2757–68.
Gaieb Z, Parks CD, Chiu M, Yang H, Shao C, Walters WP, et al. D3R grand challenge 3: blind prediction of protein–ligand poses and affinity rankings. J Comput-Aided Mol Des. 2019;331–18.
Ghosh I, Talukdar P. Molecular docking and pharmacokinetics study for selected leaf phytochemicals from Carica papaya Linn. Against dengue virus protein, NS2B/NS3 protease. World Sci News. 2019;124:264–78.
Gorgani L, Mohammadi M, Najafpour GD, Nikzad M. Piperine: the bioactive compound of black pepper: from isolation to medicinal formulations. Compr Rev Food Sci Food Saf. 2017;16:124–40.
Hadinegoro SR, Arredondo-García JL, Capeding MR, Deseda C, Chotpitayasunondh T, Dietze R, et al. Efficacy and long-term safety of a dengue vaccine in regions of endemic disease. N Engl J Med. 2015;373:1195–206.
Kapoor I, Singh B, Singh G, De Heluani CS, De Lampasona M, Catalan CA. Chemistry and in vitro antioxidant activity of volatile oil and oleoresins of black pepper (Piper nigrum). J Agric Food Chem. 2009;57:5358–64.
Kashyap S. Comparative insillico studies on phytochemicals of Ocimum as natural inhibitors of Ebola vp-35 protein. Indo Am J Pharm. 2019;10(10):489–511.
Kehinde I, Ramharack P, Nlooto M, Gordon M. The pharmacokinetic properties of HIV-1 protease inhibitors: a computational perspective on herbal phytochemicals. Heliyon. 2019;5:e02565.
Kumar R, Dwivedi N, Singh R, Kumar S, Rai VP, Singh M. A review on molecular characterization of pepper for capsaicin and oleoresin. Int J Plant Breed. 2011;5:99–110.
Lee SH, Kim HY, Back SY, Han HK. Piperine-mediated drug interactions and formulation strategy for Piperine: recent advances and future perspectives. Expert Opin Drug Metab Toxicol. 2018;14:43–57.
Madelain V, Duthey A, Mentré F, Jacquot F, Solas C, Lacarelle B, et al. Ribavirin does not potentiate favipiravir antiviral activity against Ebola virus in non-human primates. Antiviral Res. 2020;104758.
Malvy D, McElroy AK, de Clerck H, Günther S, van Griensven J. Ebola virus disease. The Lancet. Lancet Publishing Group; 2019. p. 936–48.
Mir A, Ismatullah H, Rauf S, Niazi UH. Identification of bioflavonoid as fusion inhibitor of dengue virus using molecular docking approach. Inform Med Unlocked. 2016;3:1–6.
Nagarajan N, Yapp EK, Le NQK, Yeh H-Y. In silico screening of sugar alcohol compounds to inhibit viral matrix protein VP40 of Ebola virus. Mol Biol Rep. 2019;46:3315–24.
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, et al. UCSF Chimera: a visualization system for exploratory research and analysis. J Comput Chem. 2004;25:1605–12.
Raj U, Varadwaj PK. Flavonoids as multi-target inhibitors for proteins associated with Ebola virus: In: Silico discovery using virtual screening and molecular docking studies. Interdisciplinary Sciences: Computational Life Sciences. International Association of Scientists in the International Association of Scientists in the; 2016;8:132–41.
Rajapakse S, De Silva NL, Weeratunga P, Rodrigo C, Sigera C, Fernando SD. Carica papaya extract in Dengue: a systematic review and meta-analysis. BMC Complementary and Alternative Medicine. BioMed Central Ltd.; 2019;19.
Rajapakse S, Rodrigo C, Maduranga S, Rajapakse A. Corticosteroids in the treatment of dengue shock syndrome. Infect Drug Resist. 2014;7:37–143.
Shaheen N, Akhter-Sultan R, Abidi S, Azhar I, Mahmood ZA. Pharmacognostic evaluation and instrumental analysis (sem) for the standardization of Piper nigrum l., (black pepper) fruit. Pak J Bot. 2019;51:1859–63.
Shankaracharya N, Jaganmohan RL, Pura NJ, Nagalakshmi S. Characterisation of chemical constituents of Indian long pepper (Piper longum L). J Food Sci Technol. 1997;34:73–5.
Simhadri N, Muniappan M, Kannan I, Viswanathan S. Phytochemical analysis and docking study of compounds present in a polyherbal preparation used in the treatment of dermatophytosis. Curr Med Mycol. 2017;3:6.
Srinivasan K. Black pepper and its pungent principle-piperine: a review of diverse physiological effects. Crit Rev Food Sci Nutr. 2007;47(8):735–48.
Stanaway JD, Shepard DS, Undurraga EA, Halasa YA, Coffeng LE, Brady OJ, et al. The global burden of Dengue: an analysis from the Global Burden of Disease Study 2013. Lancet Infect Dis. 2016;16:712–23.
Takhampunya R, Ubol S, Houng HS, Cameron CE, Padmanabhan R. Inhibition of dengue virus replication by mycophenolic acid and Ribavirin. J Gen Virol. 2006;87:1947–52.
Tanchuk VY, Tanin VO, Vovk AI, Poda G. A new, improved hybrid scoring function for molecular docking and scoring based on autodock and autodock vina. Chem Biol Drug Des. 2016;87:618–25.
Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31:455–61.
Upadhyay V, Sharma N, Joshi HM, Malik A, Mishra M, Singh BP, et al. Development and validation of rapid RP-HPLC method for estimation of piperine in Piper nigrum L. Int J Herbal Med. 2013;1:6–9.
Zhang APP, Bornholdt ZA, Liu T, Abelson DM, Lee DE, Li S, et al. The Ebola virus interferon antagonist VP24 directly binds STAT1 and has a novel, pyramidal fold. PLoS Pathog. 2012;8:e1002550.
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Nag, A., Chowdhury, R.R. Piperine, an alkaloid of black pepper seeds can effectively inhibit the antiviral enzymes of Dengue and Ebola viruses, an in silico molecular docking study. VirusDis. 31, 308–315 (2020). https://doi.org/10.1007/s13337-020-00619-6
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DOI: https://doi.org/10.1007/s13337-020-00619-6