Abstract
The genus Tomophagus belongs to the order Polyporales and is enriched with only two species, Tomophagus cattienensis X.T. Le & Moncalvo and Tomophagus colossus (Fr.) Murrill with very limited distribution. Tomophagus cattienensis was originally described from Cat Tien National Park, Vietnam and later reported from Pakistan. To date, there was no report of the occurrence of T. cattienensis from India. Here, we report T. cattienensis as a new addition to the macro-fungal flora of India. Morpho-taxonomic and nrDNA ITS-based phylogenetic analyses identify this taxon. Detailed morphological characterization, field images, microscopic structure line drawings, and comparisons with associated taxa are provided.
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References
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772. https://doi.org/10.1038/nmeth.2109.
Geyer CJ Markov chain Monte Carlo maximum likelihood. In: Keramidas EM, editor. Computing science and statistics; proceedings of the 23rd symposium on the interface. Washington: Interface Foundation of North America, Fairfax Station; 1991. pp. 156–163.
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser. 1999;4:95–8.
Hapuarachchi KK, Karunarathna SC, Phengsintham P, Yang HD, Kakumyan P, Hyde KD, Wen TC. Ganodermataceae (Polyporales): diversity in greater Mekong Subregion countries (China, Laos, Myanmar, Thailand and Vietnam). Mycosphere. 2019;10(1):221–309. https://doi.org/10.5943/mycosphere/10/1/6.
Hien BTT, Hoa LTP, Tham LX, Quang DN. Cattienoids A-C, three novel steroids from the mushroom Tomophagus cattienensis. Fitoterapia. 2013;91:125–7. https://doi.org/10.1016/j.fitote.2013.08.020.
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast fourier transform. Nucleic Acids Res. 2002;30:3059–66. https://doi.org/10.1093/nar/gkf436.
Kornerup A, Wanscher JH. Methuen’s handbook of colours. 3rd ed. London: Methuen and Co.; 1978.
Miyazaki A, Shigaki T, Koinuma H, Iwabuchi N, Rauka GB, Kembu A, Saul J, Watanabe K, Nijo T, Maejima K, Yamaji Y. ‘Candidatus Phytoplasma noviguineense’, a novel taxon associated with Bogia coconut syndrome and banana wilt disease on the island of New Guinea. Int J Syst Evolut Microbiol. 2018;68(1):170–5. https://doi.org/10.1093/molbev/msw054.
Le XT, Le Nguyen QH, Pham ND, Duong VH, Dentinger BT, Moncalvo JM. Tomophagus cattienensis sp. Nov., a new Ganodermataceae species from Vietnam: evidence from morphology and ITS DNA barcodes. Mycol Progress. 2012;11:775–80. https://doi.org/10.1007/s11557-011-0789-3.
Loyd AL, Barnes CW, Held BW, Schink MJ, Smith ME, Smith JA, Blanchette RA. Elucidating “lucidum”: distinguishing the diverse laccate Ganoderma species of the United States. PLoS ONE. 2018;13(7):e0199738. https://doi.org/10.1371/journal.pone.0199738.
Miller MA, Pfeiffer W, Schwartz T. Creating the CIPRES science gateway for inference of large phylogenetic trees. In: proceedings of the gateway computing environments workshop (GCE). New Orleans, LA: IEEE; 2010. pp. 1–8.
Murrill WA. Tomophagus for Dendrophagus. Torreya. 1905;5:197.
Pradhan P, Dutta AK, Acharya K. A low-cost long-term preservation of macromycetes for fungarium. Protoc Exch. 2015. https://doi.org/10.1038/protex.2015.026.
Ronquist F, Teslenko M, Mark PVD, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012;61(3):539–42. https://doi.org/10.1093/sysbio/sys029.
Saha R, Dutta AK, Acharya K. Murinicarpus subadustus: a new record from India, its morphology and phylogeny. Czech Mycol. 2022;74(1):103–9.
Saha R, Sett S, Chatterjee T, Basak G, Roy A, Acharya K. Contribution to the macromycetes of West Bengal, India: 57–62. Res J Pharm Technol. 2019;12(12):5911–6. https://doi.org/10.5958/0974-360X.2019.01025.4.
Sharma JR. Aphylloporales of himalaya (Auriscalpiaceae-Tremellodendropsis). Kolkata: Botanical Survey of India; 2012.
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688–90. https://doi.org/10.1093/bioinformatics/btl446.
Umar A, Ahmed S, Guzmán-Dávalos L, Cabarroi-Hernández M. Ganoderma multipileum and Tomophagus cattienensis— new records from Pakistan. Mycotaxon. 2022;137(1):135–51.
White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press; 1990. pp. 315–22. https://doi.org/10.1016/b978-0-12-372180-8.50042-1.
Acknowledgements
The authors would like to express special gratitude to the Department of Environment, Government of West Bengal, India and University Grant Commission (UGC) for providing financial support. Special thanks are also greeted to DST-PURSE and DST-FIST for providing essential infrastructural aids. Authors are also grateful to the Directorate of Forest, Government of West Bengal for extending their assistance during the field visit.
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Saha, R., Dutta, A.K., Roy, A. et al. Morphology and phylogeny revealed Tomophagus cattienensis (Ganodermataceae) as a new record for India. Nucleus 66, 161–166 (2023). https://doi.org/10.1007/s13237-023-00422-w
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DOI: https://doi.org/10.1007/s13237-023-00422-w