Skip to main content

Advertisement

Log in

Endophytic mycobiota of leaves and roots of the grass Holcus lanatus

  • Published:
Fungal Diversity Aims and scope Submit manuscript

Abstract

Holcus lanatus is a grass that grows in humid, often waterlogged soils in temperate zones around the world. The purpose of this work was to identify fungal endophytes associated with its roots and leaves, and to describe the diversity and spatial distribution patterns found in its mycobiota. Holcus plants were sampled at 11 locations in western and northern Spain, and endophytes were isolated from leaves and roots of each plant. Morphological and molecular methods based on the ITS1-5.8SrRNA-ITS2 sequence were used for isolate identification. In total, 134 different species were identified, 77 occurred in leaves, 79 in roots, and 22 were common to both organs. The dominant species of the mycobiota were isolated from roots and leaves, and were species generally considered as multi-host endophytes. The species richness was similar in leaves and roots, but the composition of isolates from roots varied more among locations than in leaf mycobiotas, suggesting that soil characteristics may have strongly influenced the root mycobiota. Significant variations with respect to the composition of their mycobiota among different locations indicate that beta diversity is a first order factor governing the richness and distribution of the endophytic mycobiota in grasses.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Arnold AE (2007) Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers. Fungal Biol Rev 21:51–66

    Article  Google Scholar 

  • Arnold AE, Lutzoni F (2007) Diversity an host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541–549

    Article  PubMed  Google Scholar 

  • Arnold AE, Maynard Z, Gilbert GS, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267–274

    Article  Google Scholar 

  • Bacon CW, Porter JK, Robbins JD, Luttrell ES (1977) Epichloë typhina from toxic tall fescue grasses. Appl Environ Microbiol 34:576–581

    CAS  PubMed  Google Scholar 

  • Bills GF (1996) Isolation and analysis of endophytic fungal communities from woody plants. In: Erdlin SC, Carris LM (eds) Endophytic fungi in grasses and woody plants. APS, USA, pp 31–65

    Google Scholar 

  • Colwell RK (2005) EstimateS: statistical estimation of species richness and shared species from samples. Version 7.5. Persistent URL <purl.oclc.org/estimates>

  • Crozier J, Thomas SE, Aime MC, Evans HC, Holmes KA (2006) Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao. Plant Pathol 55:783–791

    Article  CAS  Google Scholar 

  • Curlevski NJA, Chambers SM, Anderson IC, Cairney JWG (2009) Identical genotypes of an ericoid mycorrhiza-forming fungus occur in roots of Epacris pulchella (Ericaceae) and Leptospermum polygalifolium (Myrtaceae) in an Australian sclerophyll forest. FEMS Microbiol Ecol 67:411–420

    Article  CAS  PubMed  Google Scholar 

  • Duong LM, Jeewon R, Lumyong S, Hyde KD (2006) DGGE coupled with ribosomal DNA phylogenies reveal uncharacterized fungal phylotypes on living leaves of Magnolia liliifera. Fungal Divers 23:121–138

    Google Scholar 

  • Fang Z, Ouyang Z, Hu L, Wang X, Zheng H, Lin X (2005) Culturable airborne fungi in outdoor environments in Beijing, China. Sci Total Environ 350:47–58

    Article  CAS  PubMed  Google Scholar 

  • Fletcher LR, Harvey IC (1981) An association of a Lolium endophyte with ryegrass staggers. NZ Vet J 29:185–186

    CAS  Google Scholar 

  • Freeman EM (1902) The seed fungus of Lolium temulentum L., the darnel. Philos Trans R Soc Lond, B 196:1–27

    Article  Google Scholar 

  • Fröhlich J, Hyde KD, Petrini O (2000) Endophytic fungi associated with palms. Mycol Res 104(10):1202–1212

    Article  Google Scholar 

  • Gange AC, Dey S, Currie AF, Sutton BC (2007) Site-and species specific differences in endophyte occurrence in two herbaceous plants. J Ecol 95:614–622

    Article  Google Scholar 

  • Guerin D (1898) Sur la presence d’un Champignon dans l’lvraie. J Bot 12:230–238

    Google Scholar 

  • Guo LD, Hyde KD, Liew ECY (2000) Identification of endophytic fungi from Livistonia chinensis based on morphology and rDNA sequences. New Phytol 147:617–630

    Article  CAS  Google Scholar 

  • Guo LD, Hyde KD, Liew ECD (2001) Detection and taxonomic placement of endophytic fungi within frond tissues of Livistona chinensis based on rDNA sequences. Mol Phylogenet Evol 20:1–13

    Article  PubMed  CAS  Google Scholar 

  • Huang WY, Cai YZ, Hyde KD, Corke H, Sun M (2008) Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants. Fungal Divers 33:61–75

    Google Scholar 

  • Huang WY, Cai YZ, Surveswaran S, Hyde KD, Corke H, Sun M (2009) Molecular phylogenetic identification of endophytic fungi isolated from three Artemisia species. Fungal Divers 36:69–88

    CAS  Google Scholar 

  • Hubbard CE (1984) Grasses. A guide to their structure, identification, uses and distribution in the British Isles. Penguin, London

    Google Scholar 

  • Hyde KD, Soytong K (2008) The fungal endophyte dilemma. Fungal Divers 33:163–173

    Google Scholar 

  • Kuldau G, Bacon C (2008) Clavicipitaceous endophytes: their ability to enhance resistance of grasses to multiple stresses. Biol Control 46:57–71

    Article  Google Scholar 

  • Lacap DC, Hyde KD, Liew ECY (2003) An evaluation of the fungal ‘morphotype’ concept based on ribosomal DNA sequences. Fungal Divers 12:53–66

    Google Scholar 

  • Li WC, Zhou J, Guo SY, Guo LD (2007) Endophytic fungi associated with lichens in Baihua mountain of Beijing, China. Fungal Divers 25:69–80

    Google Scholar 

  • Magurran AE (2004) Measuring biological diversity. Blackwell, Oxford

    Google Scholar 

  • Malinowski DP, Belesky DP (2000) Adaptations of endophyte-infected coolseason grasses to environmental stresses: mechanisms of drought and mineral stress tolerance. Crop Sci 40:923–940

    Article  CAS  Google Scholar 

  • Mitchell AM, Strobel GA, Hess WM, Vargas PN, Ezra D (2008) Muscodor crispans, a novel endophyte from Ananas ananassoides in the Bolivian Amazon. Fungal Divers 31:37–43

    Google Scholar 

  • Morakotkarn D, Kawasaki H, Seki T (2006) Molecular diversity of bamboo-associated fungi isolated from Japan. FEMS Microbiol Lett 266:10–19

    Article  PubMed  CAS  Google Scholar 

  • Neubert K, Mendgen K, Brinkmann H, Wirsel SGR (2006) Only a few fungal species dominate highly diverse mycofloras associated with the common reed. Appl Environ Microbiol 72:1118–1128

    Article  CAS  PubMed  Google Scholar 

  • Nikolcheva LG, Bärlocher F (2005) Seasonal and substrate preferences of fungi colonizing leaves in streams: traditional versus molecular evidence. Environ Microbiol 7:270–280

    Article  CAS  PubMed  Google Scholar 

  • Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E (2009) The ITS region as a target for characterization of fungal communities using emergent sequencing technologies. FEMS Microbiol Lett 296:97–101

    Article  CAS  PubMed  Google Scholar 

  • Portnoy JM, Barnes CS, Kennedy K (2008) Importance of mold allergy in asthma. Curr Allergy Asthma Rep 8:71–78

    Article  CAS  PubMed  Google Scholar 

  • Raghukumar C (2008) Marine fungal biotechnology: an ecological perspective. Fungal Divers 31:19–35

    Google Scholar 

  • Redman RS, Dunigan DD, Rodriguez RJ (2001) Fungal symbiosis from mutualism to parasitism: who controls the outcome, host or invader? New Phytol 151:705–716

    Article  Google Scholar 

  • Rosa LH, Vaz ABM, Caligiorne RB, Campolina S, Rosa CA (2009) Endophytic fungi associated with the Antarctic grass Deschampsia antarctica Desv. Polar Biol 32:161–167

    Article  Google Scholar 

  • Rungjindamai N, Pinruan U, Choeyklin R, Hattori T, Jones EBG (2008) Molecular characterization of basidiomycetous endophytes isolated from leaves, rachis and petioles of the oil palm, Elaeis guineensis, in Thailand. Fungal Divers 33:139–161

    Google Scholar 

  • Sánchez Márquez S, Bills GF, Zabalgogeazcoa I (2007) The endophytic mycobiota of the grass Dactylis glomerata. Fungal Divers 27:171–195

    Google Scholar 

  • Sánchez Márquez S, Bills GF, Zabalgogeazcoa I (2008) Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses. Fungal Divers 33:87–100

    Google Scholar 

  • Schardl CL, Leuchtmann A, Spiering MJ (2004) Symbioses of grasses with seedborne fungal endophytes. Annu Rev Plant Biol 55:315–340

    Article  CAS  PubMed  Google Scholar 

  • Schulz B, Boyle C (2005) The endophytic continuum. Mycol Res 109:661–686

    Article  PubMed  Google Scholar 

  • Schulz B, Guske S, Dammann U, Boyle C (1998) Endophyte-host interactions II. Defining symbiosis of the endophyte-host interaction. Symbiosis 25:213–227

    Google Scholar 

  • Seena S, Wynberg N, Bärlocher F (2008) Fungal diversity during leaf decomposition in a stream assessed through clone libraries. Fungal Divers 30:1–14

    Google Scholar 

  • Sieber TN (2007) Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev 21:75–89

    Article  Google Scholar 

  • Stone JK, Polishook JD, White JF Jr (2004) Endophytic fungi. In: Mueller GM, Bills GF, Foster MS (eds) Biodiversity of fungi. Inventory and monitoring methods. Elsevier Academic Press, USA, pp 241–270

    Chapter  Google Scholar 

  • Tao G, Liu ZY, Hyde KD, Lui XZ, Yu ZN (2008) Whole rDNA analysis reveals novel and endophytic fungi in Bletilla ochracea (Orchidaceae). Fungal Divers 33:101–122

    Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876–4882

    Article  Google Scholar 

  • Tomita F (2003) Endophytes in Southeast Asia and Japan: their taxonomic diversity and potential applications. Fungal Divers 14:187–204

    Google Scholar 

  • Toofanee SB, Dulymamode R (2002) Fungal endophytes associated with Cordemoya integrifolia. Fungal Divers 11:169–175

    Google Scholar 

  • Wei JG, Xu T, Guo LD, Liu AR, Zhang Y, Pan XH (2007) Endophytic Pestalotiopsis species associated with plants of Podocarpaceae, Theaceae and Taxaceae in southern China. Fungal Divers 24:55–74

    CAS  Google Scholar 

  • White IR, Backhouse D (2007) Comparison of fungal endophyte communities in the invasive panicoid grass Hyparrhenia hirta and the native grass Botriochloa macra. Aust J Bot 55:178–185

    Article  Google Scholar 

  • Wirsel SGR, Leibinger W, Ernst M, Mendgen K (2001) Genetic diversity of fungi commonly associated with common reed. New Phytol 149:589–598

    Article  CAS  Google Scholar 

  • Zamora P, Martínez-Ruiz C, Diez JJ (2008) Fungi in needles and twigs of pine plantations from northern Spain. Fungal Divers 30:171–184

    Google Scholar 

Download references

Acknowledgements

Part of this research was financed with research projects GR64 and CSI04A07, granted by the Junta de Castilla y León.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to I. Zabalgogeazcoa.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sánchez Márquez, S., Bills, G.F., Domínguez Acuña, L. et al. Endophytic mycobiota of leaves and roots of the grass Holcus lanatus . Fungal Diversity 41, 115–123 (2010). https://doi.org/10.1007/s13225-009-0015-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13225-009-0015-7

Keywords

Navigation