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The complete chloroplast genome sequence of Chinese wild grape Vitis amurensis (Vitaceae: Vitis L.)

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Abstract

Vitis amurensis is a species of wild grape with high ecological, medicinal, and economic values. Here, the complete chloroplast genome of this plant was assembled from whole-genome high-throughput sequencing data. The circular double-stranded DNA molecule is 160,953 bp in size, including a pair of inverted repeats (26,354 bp each) separated by large (89,187 bp) and small (19,058 bp) single-copy regions. The chloroplast genome contains 133 genes, including 88 protein-coding genes (80 PCG species), 37 transfer RNA genes (29 tRNA species) and eight ribosomal RNA genes (four rRNA species), 20 of which are duplicated, including eight protein-coding, eight tRNA, and four rRNA genes. The base composition is asymmetric (30.93 % A, 19.07 % C, 18.33 % G, 31.67 % T) with an overall A + T content of 62.60 %. A phylogenetic analysis based on complete chloroplast genome sequences showed that V. amurensis is closely related to V. vinifera, V. aestivalis, and V. rotundifolia.

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Acknowledgments

This work was supported by the Agricultural Science and Technology Innovation Program (CAAS-ASTIP-2016-ZFRI) and Crop Resources Protection Program of China Ministry of Agriculture (NB2016-20130135-34).

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Authors and Affiliations

  1. Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, 450009, China

    Haikun Xie, Jian Jiao, Xiucai Fan, Ying Zhang, Jianfu Jiang, Haisheng Sun & Chonghuai Liu

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  1. Haikun Xie
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  2. Jian Jiao
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  3. Xiucai Fan
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  4. Ying Zhang
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  5. Jianfu Jiang
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  7. Chonghuai Liu
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Correspondence to Chonghuai Liu.

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Xie, H., Jiao, J., Fan, X. et al. The complete chloroplast genome sequence of Chinese wild grape Vitis amurensis (Vitaceae: Vitis L.). Conservation Genet Resour 9, 43–46 (2017). https://doi.org/10.1007/s12686-016-0615-y

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