Skip to main content
Log in

Development and characterization of 29 polymorphic microsatellite loci for Esomus metallicus

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

Twenty-nine microsatellite loci were isolated and characterized from the genome of Esomus metallicus. Flanking polymerase chain reaction primers were designed and used to amplify these loci in 32 individuals. All loci were polymorphic; with allele numbers ranged from 2 to 27, observed heterozygosity from 0.031 to 0.969 and expected heterozygosity from 0.031 to 0.957. All conformed to Hardy–Weinberg equilibrium and no evidence of null alleles was observed. Pairwise comparisons between alleles did not detect any cases of linkage disequilibrium. The high level of polymorphisms observed in these microsatellite loci should enhance future investigation of the genetic differentiation and structure of populations of E. metallicus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Fang F (2003) Phylogenetic analysis of the Asian cyprinid genus Danio (Teleostei, Cyprinidae). Copeia 2003:714–728

    Article  Google Scholar 

  • Fang F, Norén M, Liao TY, Källersjö M, Kullander SO (2009) Molecular phylogenetic interrelationships of the south Asian cyprinid genera Danio, Devario and Microrasbora (Teleostei, Cyprinidae, Danioninae). Zool Scr 38:1–20

    Article  Google Scholar 

  • Glenn TC, Schable NA (2005) Isolating microsatellite DNA loci. Methods Enzymol 395:202–222

    Article  PubMed  CAS  Google Scholar 

  • Kottelat M (1998) Fishes of the Nam Theun and Xe Bangfai basins, Laos, with diagnoses of twenty-two new species (Teleostei: cyprinidae, Balitoridae, Cobitidae, Coiidae and Odontobutidae). Ichthyol Explor Freshwat 9:1–128

    Google Scholar 

  • Lorenz E, Frees KL, Schwartz DA (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31:24–27

    Google Scholar 

  • Mayden RL, Tang KL, Conway KW, Freyhof J, Chamberlain S, Haskins M, Schneider L, Sudkamp M, Wood RM, Agnew M, Bufalino A, Sulaiman Z, Miya M, Saitoh K, He S (2007) Phylogenetic relationships of Danio within the order cypriniformes: a framework for comparative and evolutionary studies of a model species. J Exp Zool Mol Dev Evol 308B:642–654

    Article  CAS  Google Scholar 

  • Phillips MJ (2002) Freshwater aquaculture in the lower Mekong basin. MRC Technical Paper No. 7, Mekong River Commission, Phnom Penh

  • Rainboth WJ (1996) Fishes of the Cambodian Mekong. FAO species identification field guide for fishery purposes., FAO, Rome

    Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225

    Article  Google Scholar 

  • Rousset F (2008) Genepop’007: a complete reimplementation of the genepop software for windows and linux. Mol Ecol Resour 8:103–106

    Article  PubMed  Google Scholar 

  • St. John J, Quinn TW (2008) Rapid capture of DNA targets. Biotechniques 44:259–264

    Article  PubMed  CAS  Google Scholar 

  • Tang KL, Agnew MK, Hirt MV, Sado T, Schneider LM, Freyhof J, Sulaiman Z, Swartz E, Vidthayanon C, Miya M, Saitoh K, Simons AM, Wood RM, Mayden RL (2010) Systematics of the subfamily Danioninae (Teleostei: cypriniformes: cyprinidae). Mol Phylogenet Evol 57:189–214

    Article  PubMed  Google Scholar 

  • Tomokawa S, Kobayashi T, Kingsada A, Kaneda E, Moji K, Nisaygnang B, Pongvongsa T, Boupha B (2008) Surveying factors related to primary school children’s Opisthorchis viverrini infection in rural central-southern Laos -relationship between children’s and their guardian’s habit of eating raw fish and children’s Opisthorchis viverrini infection. J Health Sci 7:51–58 (Hiroshima University)

    Google Scholar 

  • van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

  • Welcomme RL, Vidthayanon C (2003) The impact of introductions and stocking of exotic species in the Mekong basin and policies for their control. Technical Paper No. 9, Mekong River Commission, Phnom Penh

Download references

Acknowledgments

This study was conducted in part as a cooperative survey of the Japan International Research Center for Agricultural Sciences (JIRCAS) and the Living Aquatic Resources Research Center, Lao PDR (LARRC). Our thanks go to Mses. Poutsamone Pommachan and Phonaphet Chantasone for their assistance in the field research, and to Mses. Kyoko Yamanoi and Ponthip Goto for their supports in chemical analyses. This study was supported in part by a Grant-in-Aid for Scientific Research (C-23580340, B-22405030 and B-22380133) from the Japan Society for the Promotion of Science.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Noriyuki Koizumi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Koizumi, N., Morioka, S., Quinn, T.W. et al. Development and characterization of 29 polymorphic microsatellite loci for Esomus metallicus . Conservation Genet Resour 4, 1027–1030 (2012). https://doi.org/10.1007/s12686-012-9699-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-012-9699-1

Keywords

Navigation