Skip to main content
Log in

Molecular phylogenetic implications in Brassica napus based on internal transcribed spacer sequences

  • RESEARCH NOTE
  • Published:
Journal of Genetics Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1

References

  • Abdelmigid H. M. 2012 Efficiency of random amplified polymorphic DNA (RAPD) and inter-simple sequence repeats (ISSR) markers for genotype fingerprinting and genetic diversity studies in canola (Brassica napus). African J. Biotechnol. 11, 6409–6419.

    CAS  Google Scholar 

  • Afiah S. A., Abdelsalam A. Z. E., Kamel E. A., Dowidar A. E. and Ahmed S. M. 2007 Molecular genetic studies on canola crosses under Maryout conditions. Afr. Crop Sci. Conf. Proc. 8, 633– 642.

    Google Scholar 

  • Ali M. A., Van D. L. and Kim S.-Y. 2010 Molecular systematic study of Cardamine glechomifolia Levl. (Brassicaceae) using internal transcribed spacer sequence of nuclear ribosomal DNA (ITS) and chloroplast trnL and trnL-F sequences. Saudi J. Biol. Sci. 17, 275–290.

    Article  CAS  Google Scholar 

  • Baldwin B. G., Sanderson M. J., Porter J. M., Wojciechowski M. F., Campbell C. S. and Donoghue M. J. 1995 The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Mol. Bot. Gard. 82, 247–277.

    Article  Google Scholar 

  • Baraket G., Saddoud O., Chatti K., Mars M. et al. 2009 Sequence analysis of the internal transcribed spacers (ITSs) region of the nuclear ribosomal DNA (nrDNA) in fig cultivars (Ficus carica L.). Scientia Horticulturae 120, 34–40.

    Article  CAS  Google Scholar 

  • Bleeker W., Klausmeyer S., Peintinger M. and Dienst M. 2008 DNA sequences identify in vasivealien Cardamine at Lake Constance. Biol. Conserv. 141, 692–698.

    Article  Google Scholar 

  • Eck R. V. and Dayhoff M. O. 1966 Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Springs, MD.

    Google Scholar 

  • Efron B., Halloran E. and Holmes S. 1996 Bootstrap confidence levels for phylogenetic trees. Proceedings of the National Academy of Sciences of the United States of America 93, 13429–13434.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fayyaz L., Farhatullah Rabbani M. A., Iqbal S., Kanwal M. and Nawaz I. 2014 Genetic diversity analysis of Brassica napus/Brassica campestris progenies using microsatellite markers. Pak. J. Bot. 46, 779–787.

    Google Scholar 

  • Jorgensen J., Stehlik I., Brochmann C. and Conti E. 2003 Implications of ITS sequences and RAPD markers for the taxonomy and biogeography of the Oxytropis campestris and O. arctica (Fabaceae) complexes in Alaska. Am. J. Bot. 90, 1470– 1480.

    Article  CAS  PubMed  Google Scholar 

  • Kimura M. 1980 A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111–120.

    Article  CAS  PubMed  Google Scholar 

  • Liu A. and Wang J. 2005 Evolution of parental ITS regions of nuclear rDNA in allopolyploid Brassica species. College of Life Sciences, Wuhan University, Wuhan, Hubei 430072, P.R. China.

  • Moghaddam M., Mohammmadi M. S., Mohebalipour N., Toorchil M., Aharizad S. and Javidfar F. 2010 Assessment of genetic diversity in rapeseed cultivars as revealed by RAPD and microsatellite markers. Afr. J. Biotechnol. 8, 3160–3167.

    Google Scholar 

  • Saitou N. and Nei M. 1987 The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.

    CAS  PubMed  Google Scholar 

  • Tamura K., Dudley J., Nei M. and Kumar S. 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596–1599.

    Article  CAS  PubMed  Google Scholar 

  • Thormann C. E., Ferreira M. E., Camargo L. E. A., Tivang J. G. and Osborn T. C. 1994 Comparison of RFLP and RAPD markers to estimate genetic relationships within and among cruciferous species. Theor. Appl. Genet. 88, 973–980.

    Article  CAS  PubMed  Google Scholar 

  • Warwick S., Legere A., Simard M.-J. and James T. 2008 Do escaped transgenes persist in nature? The case of a herbicide resistance transgene in a weedy Brassica rapa population. Mol. Ecol. 17, 1387–1395.

    Article  CAS  PubMed  Google Scholar 

  • Wu C.-T., Hsieh C.-C., Lin W.-C., Tang C.-Y. et al. 2013 Internal transcribed spacer sequence-based identification and phylogenic relationship of I-Tiao-Gung originating from Flemingia and Glycine (Leguminosae) in Taiwan. J. Food Drug Anal. 21, 356–362.

    Article  CAS  Google Scholar 

  • Zhaoa G. J., Yang Z. Q., Chenb X.-P. and Guoa Y.-H. 2011 Genetic relationships among loquat cultivars and some wild species of the genus Eriobotrya based on the internal transcribed spacer (ITS) sequences. Scientia Horticulturae 130, 913–918.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to HALA M. ABDELMIGID.

Additional information

[Abdelmigid H. M. and El-Sayed A. 2016 Molecular phylogenetic implications in Brassica napus based on internal transcribed spacer sequences. J. Genet. 95, xx–xx]

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

ABDELMIGID, H.M., EL-SAYED, A. Molecular phylogenetic implications in Brassica napus based on internal transcribed spacer sequences. J Genet 95, 447–451 (2016). https://doi.org/10.1007/s12041-016-0631-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12041-016-0631-4

Keywords

Navigation