Abstract
Here, we describe machine learning models, predicted ADMET properties, and analysis in vitro activity of selected 4-iminohydantoin sulfamide derivatives with different N-substitution against human cytomegalovirus (HCMV). Among six compounds bearing aliphatic cyclic amine part with alkoxycarbonyl or CF3-diazirine substituents, four derivatives exhibited antiviral activity (EC50: 0.15–0.95 μM) against a wild-type laboratory HCMV (strain AD169) in human foreskin fibroblast cells comparable to that of ganciclovir (EC50: 0.39 μM), an anti-HCMV agent in clinical use. Two of the aliphatic cyclic amine-containing compounds showed higher potency (EC50: 0.13 and 0.54 μM) toward the resistant isolate (GDGRK17) compared to standard drug ganciclovir (EC50: 13.44 μM), and comparable to cidofovir (EC50: 0.11 µM). However, as with the wild-type strain, these hydantoins were more toxic and less selective than the standard drugs. In contrast to the primary assay, secondary analysis using quantitative polymerase chain reaction did not confirm the results of the primary one. The data obtained indicate that the 4-iminohydantoin sulfamide derivatives with alicyclic amine moiety may be useful for designing bioactive compounds against HCMV.
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References
Aiello A, Accardi G, Candore G, Caruso C, Colomba C, Di Bona D, Duro G, Gambino CM, Ligotti ME, Pandey JP (2019) Role of immunogenetics in the outcome of HCMV infection: implications for ageing. Int J Mol Sci 20:685. https://doi.org/10.3390/ijms20030685
Basha W, Kitagawa R, Uhara M, Imazu H, Uechi K, Tanaka J (2005) Geldanamycin, a potent and specific inhibitor of Hsp90, inhibits gene expression and replication of human cytomegalovirus. Antivir Chem Chemother 16:135–146. https://doi.org/10.1177/095632020501600206
Bogner E, Egorova A, Makarov V (2021) Small molecules-prospective novel HCMV inhibitors. Viruses 13:474. https://doi.org/10.3390/v13030474
Bonavita CM, Cardin RD (2021) Don’t go breaking my heart: MCMV as a model for HCMV-associated cardiovascular diseases. Pathogens 10:619. https://doi.org/10.3390/pathogens10050619
Bresnahan WA, Boldogh I, Chi P, Thompson EA, Albrecht T (1997) Inhibition of cellular Cdk2 activity blocks human cytomegalovirus replication. Virology 231:239–247. https://doi.org/10.1006/viro.1997.8489
Campos CF, Leite L, Pereira P, Vaz CP, Branca R, Campilho F, Freitas F, Ligeiro D, Marques A, Torrado E, Silvestre R, Lacerda JF, Campos AJr, Cunha C, Carvalho A, (2019) PTX3 polymorphisms influence cytomegalovirus reactivation after stem-cell transplantation. Front Immunol 10:88. https://doi.org/10.3389/fimmu.2019.00088
Chen L, Hao Y, Song H, Liu Y, Li Y, Zhang J, Wang Q (2020) Design, synthesis, characterization, and biological activities of novel spirooxindole analogues containing hydantoin, thiohydantoin, urea, and thiourea moieties. J Agric Food Chem 68:10618–10625. https://doi.org/10.1021/acs.jafc.0c04488
Crawford LB, Diggins NL, Caposio P, Hancock MH (2022) Advances in model systems for human cytomegalovirus latency and reactivation. mBio 13:e0172421. https://doi.org/10.1128/mbio.01724-21
De Savi C, Waterson D, Pape A, Lamont S, Hadley E, Mills M, Page KM, Bowyer J, Maciewicz RA (2013) Hydantoin based inhibitors of MMP13: discovery of AZD6605. Bioorg Med Chem Lett 23:4705–4712. https://doi.org/10.1016/j.bmcl.2013.05.089
El Helou G, Razonable RR (2019) Letermovir for the prevention of cytomegalovirus infection and disease in transplant recipients: an evidence-based review. Infect Drug Resist 12:1481–1491. https://doi.org/10.2147/IDR.S180908
Gandhi RG, Kotton CN (2022) Evaluating the safety of maribavir for the treatment of cytomegalovirus. Ther Clin Risk Manag 18:223. https://doi.org/10.2147/TCRM.S303052
Griffiths P (2019) New vaccines and antiviral drugs for cytomegalovirus. J Clin Virol 116:58–61. https://doi.org/10.1016/j.jcv.2019.04.007
Gugliesi F, Coscia A, Griffante G, Galitska G, Pasquero S, Albano C, Biolatti M (2020) Where do we stand after decades of studying human cytomegalovirus? Microorganisms 8:685. https://doi.org/10.3390/microorganisms8050685
Hertel L, Chou S, Mocarski ES (2007) Viral and cell cycle–regulated kinases in cytomegalovirus-induced pseudomitosis and replication. PLOS Pathog 3:e6. https://doi.org/10.1371/journal.ppat.0030006
Johnson RA, Huong SM, Huang ES (2000) Activation of the mitogen-activated protein kinase p38 by human cytomegalovirus infection through two distinct pathways: a novel mechanism for activation of p38. J Virol 74:1158–1167. https://doi.org/10.1128/JVI.74.3.1158-1167.2000
Kachaeva MV, Pilyo SG, Hartline CB, Harden EA, Prichard MN, Zhirnov VV, Brovarets VS (2019) In vitro activity of novel derivatives of 1,3-oxazole-4-carboxylate and 1,3-oxazole-4-carbonitrile against human cytomegalovirus. Med Chem Res 28:1205–1211. https://doi.org/10.1007/s00044-019-02365-x
Kang C (2022) Maribavir: first approval. Drugs 82:335. https://doi.org/10.1007/s40265-022-01677-4
Kapoor A, Ghosh AK, Forman M, Hu X, Ye W, Southall N, Marugan J, Keyes RF, Smith BC, Meyers DJ, Ferrer M, Arav-Boger RJ (2020) Validation and characterization of five distinct novel inhibitors of human cytomegalovirus. Med Chem 63:3896–3907. https://doi.org/10.1021/acs.jmedchem.9b01501
Klimova VA (1975) Osnovnye mikrometody analiza organicheskikh soedinenii (Basic micromethods for the analysis of organic compounds). Khimiya, Moscow
Konnert L, Lamaty F, Martinez J, Colacino E (2017) Recent advances in the synthesis of hydantoins: the state of the art of a valuable scaffold. Chem Rev 117(23):13757–13809
Kornii Yu, Shablykin O, Tarasiuk T, Stepaniuk O, Matvienko V, Aloshyn D, Zahorodniuk N, Sadkova IV, Mykhailiuk PK (2023) Fluorinated aliphatic diazirines: preparation, characterization, and model photolabeling studies. J Org Chem 88:1–17. https://doi.org/10.1021/acs.joc.2c02262
Kovalishyn V, Zyabrev V, Kachaeva M, Ziabrev K, Keith K, Harden E, Hartline C, James SH, Brovarets V (2021) Design of new imidazole derivatives with anti-HCMV activity: QSAR modeling, synthesis and biological testing. J Comput Aided Mol Des 35:1177–1187. https://doi.org/10.1007/s10822-021-00428-z
Kumar M, Kumar Singh P, Choudhary S, Silakari O (2022) Hydantoin based dual inhibitors of ALR2 and PARP-1: design, synthesis, in-vitro and in-vivo evaluation. Bioorg Chem 129:106108. https://doi.org/10.1016/j.bioorg.2022.106108
Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46:3–26. https://doi.org/10.1016/S0169-409X(00)00129-0
Matsumura K, Saraie T, Hashimoto N (1976) Studies of nitriles. VII. Synthesis and properties of 2-amino-3,3-dichloroacrylonitrile (ADAN). Chem Pharm Bull 24(5):912–923
McArdle J, Schafer XL, Munger J (2011) Inhibition of calmodulin-dependent kinase kinase blocks human cytomegalovirus-induced glycolytic activation and severely attenuates production of viral progeny. J Virol 85:705–714. https://doi.org/10.1128/JVI.01557-10
Mercorelli B, Sinigalia E, Loregian A, Palù G (2008) Human cytomegalovirus DNA replication: antiviral targets and drugs. Rev Med Virol 18:177–210. https://doi.org/10.1002/rmv.558
Molinspiration Cheminformatics. https://www.molinspiration.com. Accessed 10 Mar 2022
Morgan H, Chou S (2011) The biology of cytomegalovirus drug resistance. Curr Opin Infect Dis 24:605–611. https://doi.org/10.1097/QCO.0b013e32834cfb58
Najioullah F, Thouvenot D, Lina B (2001) Development of a real-time PCR procedure including an internal control for the measurement of HCMV viral load. J Virol Methods 92:55–64. https://doi.org/10.1016/s0166-0934(00)00273-1
Nishinami S, Ikeda K, Nagao T, Koyama AH, Arakawa T, Shiraki K (2021) Aromatic interaction of hydantoin compounds leads to virucidal activities. Biophys Chem 275:106621. https://doi.org/10.1016/j.bpc.2021.106621
Pires DEV, Blundell TL, Ascher DB (2015) pkCSM: Predicting small-molecule pharmacokinetic and toxicity properties using graph-based signatures. J Med Chem 58:4066–4072. https://doi.org/10.1021/acs.jmedchem.5b00104
Rajic Z, Zorc B, Raic-Malic S, Ester K, Kralj M, Pavelic K, Balzarini J, De Clercq E, Mintas M (2006) Hydantoin derivatives of l- and d-amino acids: synthesis and evaluation of their antiviral and antitumoral activity. Molecules 11:837–848. https://doi.org/10.3390/11110837
Sanchez V, McElroy AK, Yen J, Tamrakar S, Clark CL, Schwartz RA, Spector DH (2004) Cyclin-dependent kinase activity is required at early times for accurate processing and accumulation of the human cytomegalovirus UL122-123 and UL37 immediate-early transcripts and at later times for virus production. J Virol 78:11219–11232. https://doi.org/10.1128/JVI.78.20.11219-11232.2004
Scarpini S, Morigi F, Betti L, Dondi A, Biagi C, Lanari M (2021) Development of a vaccine against human cytomegalovirus: advances, barriers, and implications for the clinical practice. Vaccines (Basel) 9:551. https://doi.org/10.3390/vaccines9060551
Shablykin OV, Kornii YuEu, Dyakonenko VV, Shablykina OV, Brovarets VS (2019) Synthesis and anticancer activity of new substituted imidazolidinone sulfonamides. Curr Chem Lett 8:199–210. https://doi.org/10.5267/j.ccl.2019.005.003
Sushko I, Salmina E, Potemkin VA, Poda G, Tetko IV (2012) ToxAlerts: a web server of structural alerts for toxic chemicals and compounds with potential adverse reactions. J Chem Inf Model 52:2310–2316. https://doi.org/10.1021/ci300245q
Terry LJ, Vastag L, Rabinowitz JD, Shenk T (2012) Human kinome profiling identifies a requirement for AMP-activated protein kinase during human cytomegalovirus infection. Proc Natl Acad Sci USA 109:3071–3076. https://doi.org/10.1073/pnas.1200494109
Tripathi V, Chatterjee KS, Das R (2019) Casein kinase-2 mediated phosphorylation increases the SUMO-dependent activity of the cytomegalovirus transactivator IE2. J Biol Chem 294:14546. https://doi.org/10.1074/jbc.RA119.009601
Zhang H, Niu X, Qian Z, Qian J, Xuan B (2015) The c-jun N-terminal kinase inhibitor SP600125 inhibits human cytomegalovirus replication. J Med Virol 87:2135–2144. https://doi.org/10.1002/jmv.24286
Acknowledgements
These studies were funded in whole or in part with Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN75N93019D00016 (SHJ). This work was supported by the National Research Foundation of Ukraine (Grant number 2020.01/0075) and by the NAS of Ukraine (within the additional departmental theme of research work in 2022 "Search and synthesis of antiviral agents among nitrogencontaining heterocycle derivatives").
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Zhirnov, V., Shablykin, O., Chumachenko, S. et al. In vitro activity of novel 4-iminohydantoin sulfamide derivatives against human cytomegalovirus. Chem. Pap. 78, 133–140 (2024). https://doi.org/10.1007/s11696-023-03038-1
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DOI: https://doi.org/10.1007/s11696-023-03038-1