Skip to main content

Advertisement

Log in

Changes in soil available cadmium and bacterial communities after fallowing depend on contamination levels

  • Soils, Sec 5 • Soil and Landscape Ecology • Research Article
  • Published:
Journal of Soils and Sediments Aims and scope Submit manuscript

Abstract

Purpose

Fallowing is an improvement process aimed at promoting the soil health and the sustainability of cultivated land. How it affects the soil health-related abiotic properties and microbial community composition under different levels of cadmium (Cd) contamination is not well known.

Materials and methods

This study involved applying consistent fallowing practices to paddy soils of low and high Cd content, in order to examine changes in the soil Cd, nutrient, and microbial community using a high-throughput sequencing method.

Results and discussion

Fallowing significantly decreased available Cd and phosphorus (P) content, but increased ammonium nitrogen (N) on lightly contaminated plots, whereas only P variables changed significantly for heavily contaminated plots. Furthermore, fallowing significantly decreased bacterial Shannon diversity on lightly contaminated plots and altered bacterial community composition on heavily contaminated plots, but it had no impact on archaeal or fungal communities, indicating that bacteria are more sensitive to fallowing than archaea and fungi. Specifically, fallowing significantly promoted some copiotrophic bacteria (Alphaproteobacteria and Betaproteobacteria) but suppressed some oligotrophic taxa (Chloroflexi phylum and OTU5837 belonging to the phylum Acidobacteria) on highly contaminated plots. Interestingly, the soil microbial community in the lightly contaminated plots was mainly affected by soil pH, C, and N properties, whereas on heavily contaminated plots, it was largely influenced by soil Cd and P variables.

Conclusions

Overall, these findings showed that fallowing significantly improved soil N availability but decreased Cd availability in lightly contaminated conditions, while shifts in microbial community composition under heavily contaminated conditions may indirectly enhance soil nutrient availability and reduce available Cd. These findings highlight the significance of fallowing to promote the health and the sustainability of Cd-contaminated cultivated land.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Aponte H, Meli P, Butler B, Paolini J, Matus F, Merino C, Cornejo P, Kuzyakov Y (2020) Meta-analysis of heavy metal effects on soil enzyme activities. Sci Total Environ 737:12

    Article  Google Scholar 

  • Bourebaba Y, Durán D, Boulila F, Ahnia H, Boulila A, Temprano F, Palacios J, Imperial J, Ruizargueso T, Rey L (2016) Diversity of Bradyrhizobium strains nodulating Lupinus micranthus on both sides of the Western Mediterranean: Algeria and Spain. Syst Appl Microbiol 39:266–274

    Article  Google Scholar 

  • Chaparro JM, Sheflin AM, Manter DK, Vivanco J (2012) Manipulating the soil microbiome to increase soil health and plant fertility. Biol Fertil Soils 48:489–499

    Article  Google Scholar 

  • Cui H, Shi Y, Zhou J, Chu H, Cang L, Zhou D (2018) Effect of different grain sizes of hydroxyapatite on soil heavy metal bioavailability and microbial community composition. Agric Ecosyst Environ 267:165–173

    Article  CAS  Google Scholar 

  • Deng S, Ke T, Li L, Cai S, Zhou Y, Liu Y, Guo L, Chen L, Zhang D (2017) Impacts of environmental factors on the whole microbial communities in the rhizosphere of a metal-tolerant plant: Elsholtzia haichowensis Sun. Environ Conta 237:1088–1097

    Google Scholar 

  • Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88:1354–1364

    Article  Google Scholar 

  • Garau G, Castaldi P, Santona L, Deiana P, Melis P (2007) Influence of red mud, zeolite and lime on heavy metal immobilization, culturable heterotrophic microbial populations and enzyme activities in a contaminated soil. Geoderma 142:47–57

    Article  CAS  Google Scholar 

  • Gilley JE, Doran JW, Eghball B (2001) Tillage and fallow effects on selected soil quality characteristics of former conservation reserve program sites. J Soil Water Conserv 56:126–132

    Google Scholar 

  • Ho A, Di Lonardo DP, Bodelier PL (2017) Revisiting life strategy concepts in environmental microbial ecology. FEMS Microbiol Ecol 93:fix006

    Article  Google Scholar 

  • Hong CO, Kim SY, Gutierrez J, Owens VN, Kim PJ (2010) Comparison of oyster shell and calcium hydroxide as liming materials for immobilizing cadmium in upland soil. Biol Fertil Soils 46:491–498

    Article  CAS  Google Scholar 

  • Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF (2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome 1:22

  • Jenkins JR, Viger M, Arnold E, Harris Z, Ventura M, Miglietta F, Girardin C, Edwards RJ, Rumpel C, Fornasier F, Zavalloni C, Tonon G, Alberti G, Taylor G (2017) Biochar alters the soil microbiome and soil function: results of next-generation amplicon sequencing across Europe. GCB Bioenergy 9:591–612

    Article  CAS  Google Scholar 

  • Lehmann J, Bossio DA, Kgel-Knabner I, Rillig MC (2020) The concept and future prospects of soil health. Nat Rev Earth Environ 1:1–10

    Article  Google Scholar 

  • Li W, Liu M, Wu M, Jiang C, Kuzyakov Y, Gavrichkova O, Feng Y, Dong Y, Li Z (2019) Bacterial community succession in paddy soil depending on rice fertilization. Appl Soil Ecol 144:92–97

    Article  Google Scholar 

  • Liang R, Hou R, Li J, Lyu Y, Hang S, Gong H, Ouyang Z (2020) Effects of different fertilizers on rhizosphere bacterial communities of winter wheat in the North China plain. Agronomy 10:93

    Article  CAS  Google Scholar 

  • Liao M, Xie X, Ma A, Peng Y (2010) Different influences of cadmium on soil microbial activity and structure with Chinese cabbage cultivated and non-cultivated. J Soils Sediments 10:818–826

    Article  CAS  Google Scholar 

  • Liao Q, Tu G, Yang Z, Wang H, He L, Tang J, Yang W (2019) Simultaneous adsorption of As(III), Cd(II) and Pb(II) by hybrid bio-nanocomposites of nano hydroxy ferric phosphate and hydroxy ferric sulfate particles coating on Aspergillus niger. Chemosphere 223:551–559

    Article  CAS  Google Scholar 

  • Liao Q, Tang J, Wang H, Yang W, Yang Z (2020) Dynamic proteome responses to sequential reduction of Cr(VI) and adsorption of Pb(II) by Pannonibacter Phragmitetus BB. J Hazard Mater 386:121988

    Article  CAS  Google Scholar 

  • Lin Y, Ye Y, Hu Y, Shi H (2019) The variation in microbial community structure under different heavy metal contamination levels in paddy soils. Ecotoxi Environ Safe 180:557–564

    Article  CAS  Google Scholar 

  • Liu J, Sui Y, Yu Z, Shi Y, Chu H, Jin J, Liu X, Wang G (2014) High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of Northeast China. Soil Biol Biochem 70:113–122

    Article  CAS  Google Scholar 

  • Liu W, Wang S, Lin P, Sun H, Hou J, Zuo Q, Huo R (2016) Response of CaCl2-extractable heavy metals, polychlorinated biphenyls, and microbial communities to biochar amendment in naturally contaminated soils. J Soils Sediments 16:476–485

    Article  CAS  Google Scholar 

  • Liu H, Wang C, Xie Y, Luo Y, Sheng M, Xu F, Xu H (2020) Ecological responses of soil microbial abundance and diversity to cadmium and soil properties in farmland around an enterprise-intensive region. J Hazard Mater 392:122478

    Article  CAS  Google Scholar 

  • Lu H, Wu Y, Liang P, Song Q, Dong C (2020) Alkaline amendments improve the health of soils degraded by metal contamination and acidification: crop performance and soil bacterial community responses. Chemosphere 257:127309

    Article  CAS  Google Scholar 

  • Luo L, Ma YB, Zhang SZ, Wei DP, Zhu YG (2009) An inventory of trace element inputs to agricultural soils in China. J Environ Manag 90:2524–2530

    Article  CAS  Google Scholar 

  • Luo LY, Xie LL, Jin DC, Mi BB, Wang DH, Li XF, Dai XZ, Zou XX, Zhang Z, Ma YQ, Liu F (2019) Bacterial community response to cadmium contamination of agricultural paddy soil. Appl Soil Ecol 139:100–106

    Article  Google Scholar 

  • Luo M, Lin H, He Y, Zhang Y (2020) The influence of corncob-based biochar on remediation of arsenic and cadmium in yellow soil and cinnamon soil. Sci Total Environ 717:137014

    Article  CAS  Google Scholar 

  • Mackelprang R, Grube AM, Lamendella R, Jesus EDC, Copeland A, Liang C, Jackson RD, Rice CW, Kapucija S, Parsa B, Tringe SG, Tiedje JM, Jansson SG (2018) Microbial community structure and functional potential in cultivated and native tallgrass prairie soils of the Midwestern United States. Front Microbiol 9:1775

    Article  Google Scholar 

  • Madrova P, Vetrovsky T, Omelka M, Grunt M, Smutna Y, Rapoport D, Vach M, Baldrian P, Kopecky J, Sagova-Mareckova M (2018) A short-term response of soil microbial communities to cadmium and organic substrate amendment in long-term contaminated soil by toxic elements. Front Microbiol 9:2807

    Article  Google Scholar 

  • Marini M, Caro D, Thomsen M (2020) The new fertilizer regulation: a starting point for cadmium control in European arable soils? Sci Total Environ 745:140876

    Article  CAS  Google Scholar 

  • Ministry of Environmental Protection of the People's Republic of China (MEP) (1995) Environmental quality standards for soils (GB15618–1995). MEP, Beijing (in Chinese)

  • Ministry of Environmental Protection of the People's Republic of China (MEP), Ministry of Land and Resources of China (MLR) (2014) National Soil Pollution Investigation Bulletin. MEP, Beijing (in Chinese)

  • Mueller RC, Belnap J, Kuske CR (2015) Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland. Front Microbiol 6:891

    Article  Google Scholar 

  • Oladipo OG, Ezeokoli OT, Maboeta MS, Bezuidenhout JJ, Tiedt LR, Jordaan A, Bezuidenhout CC (2018) Tolerance and growth kinetics of bacteria isolated from gold and gemstone mining sites in response to heavy metal concentrations. J Environ Manag 212:357–366

    Article  CAS  Google Scholar 

  • Olsen SR, Cole CV, Watanabe FS, Dean LA (1954) Estimation of available phosphorus in soils by extraction with sodium bicarbonate. United States Department of Agriculture, circular 939. United States government printing office, Washington, DC, USA

  • Page AL, Millar RH, Keeney DR (1982) Methods of soil analysis: part 2. American Society of Agronomy/Soil Science Society of America, Madison

    Google Scholar 

  • Palansooriya KN, Shaheen SM, Chen SS, Tsang DC, Hashimoto Y, Hou D, Bolan NS, Rinklebe J, Ok YS (2020) Soil amendments for immobilization of potentially toxic elements in contaminated soils: a critical review. Environ Int 134:105046

    Article  CAS  Google Scholar 

  • Pizzol M, Smart JCR, Thomsen M (2014) External costs of cadmium emissions to soil: a drawback of phosphorus fertilizers. J Clean Prod 84:475–483

    Article  CAS  Google Scholar 

  • Qu C, Shi W, Guo J, Fang B, Wang S, Giesy JP, Holm PE (2016) China’s soil contamination control: choices and challenges. Environ Sci Technol 50:13181–13183

    Article  CAS  Google Scholar 

  • Shi K, Yang Q, Li Y, Sun X (2019) Mapping and evaluating cultivated land fallow in Southwest China using multisource data. Sci Total Environ 654:987–999

    Article  CAS  Google Scholar 

  • Torsvik V, Øvreås L (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5:240–245

    Article  CAS  Google Scholar 

  • Verastegui Y, Cheng J, Engel K, Kolczynski D, Mortimer S, Lavigne J, Montalibet J, Romantsov T, Hall M, McConkey B, Rose D, Tomashek J, Scott B, Charles T, Neufeld J (2014) Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities. Mbio 5:01157–14

  • Vig K, Megharaj M, Sethunathan N, Naidu R (2003) Bioavailability and toxicity of cadmium to microorganisms and their activities in soil: a review. Adv Environ Res 8:121–135

    Article  CAS  Google Scholar 

  • Walkley AE, Black IA (1934) An examination of Degtjareff method for determining soil organic matter and a proposed modification of the chromic acid titration method. Soil Sci 37:29–38

    Article  CAS  Google Scholar 

  • Wang X, Bai J, Wei T, Feng G, Zhao H, Wei W, Wang M, Zhao Y (2018) Oilseed rape cultivation increases the microbial richness and diversity in soils contaminated with cadmium. J Soils Sediments 18:2451–2462

    Article  CAS  Google Scholar 

  • Wang X, Ya T, Zhang M, Liu L, Hou P, Lu S (2019) Cadmium (II) alters the microbial community structure and molecular ecological network in activated sludge system. Environ Contam 255:113225

    CAS  Google Scholar 

  • Wang X, Cui Y, Zhang X, Ju W, Fang L (2020) A novel extracellular enzyme stoichiometry method to evaluate soil heavy metal contamination: evidence derived from microbial metabolic limitation. Sci Total Environ 738:139709

    Article  CAS  Google Scholar 

  • Wei G, Li M, Shi W, Tian R, Chang C, Wang Z, Wang N, Zhao G, Gao Z (2020) Similar drivers but different effects lead to distinct ecological patterns of soil bacterial and archaeal communities. Soil Biol Biochem 144:107759

    Article  CAS  Google Scholar 

  • Williams H, Colombi T, Keller T (2020) The influence of soil management on soil health: an on-farm study in southern Sweden. Geoderma 360:114010

    Article  Google Scholar 

  • Xiao L, Yu Z, Liu H, Tan T, Wu J (2020) Effects of Cd and Pb on diversity of microbial community and enzyme activity in soil. Ecotoxicology 29:551–558

    Article  CAS  Google Scholar 

  • Yan C, Wang F, Geng H, Liu H, Pu S, Tian Z, Chen H, Zhou B, Yuan R, Yao J (2019) Integrating high-throughput sequencing and metagenome analysis to reveal the characteristic and resistance mechanism of microbial community in metal contaminated sediments. Sci Total Environ 707:136116

    Article  Google Scholar 

  • Yang Z, Shi W, Yang W, Liang L, Yao W, Chai L, Gao S, Liao Q (2018a) Combination of bioleaching by gross bacterial biosurfactants and flocculation: a potential remediation for the heavy metal contaminated soils. Chemosphere: Environ Toxicol Risk Assessment 206:83–91

    Article  CAS  Google Scholar 

  • Yang Z, Liang L, Yang W, Shi W, Tong Y, Chai L, Gao S, Liao Q (2018b) Simultaneous immobilization of cadmium and lead in contaminated soils by hybrid bio-nanocomposites of fungal hyphae and nano-hydroxyapatites. Environ Sci Pollut R 25:11970–11980

    Article  CAS  Google Scholar 

  • Yang L, Bai J, Zeng N, Zhou X, Liao Y, Lu Y, Rees RM, Nie J, Cao W (2019) Diazotroph abundance and community structure are reshaped by straw return and mineral fertilizer in rice-rice-green manure rotation. Appl Soil Ecol 136:11–20

    Article  Google Scholar 

  • Yao F, Yang S, Wang Z, Wang X, Ye J, Wang X, Debruyn JM, Feng X, Jiang Y, Li H (2017) Microbial taxa distribution is associated with ecological trophic cascades along an elevation gradient. Front Microbiol 8:2071

    Article  Google Scholar 

  • Yi X, Yi K, Fang K, Gao H, Dai W, Cao L (2019) Microbial community structures and important associations between soil nutrients and the responses of specific taxa to rice-frog cultivation. Front Microbiol 10:1752

    Article  Google Scholar 

  • Zhang Q, Li Y, Xing J, Brookes PC, Xu J (2019) Soil available phosphorus content drives the spatial distribution of archaeal communities along elevation in acidic terrace paddy soils. Sci Total Environ 658:723–731

  • Zhao F, Ma Y, Zhu Y, Tang Z, Mcgrath SP (2015) Soil contamination in China: current tatus and mitigation strategies. Environ Sci Technol 49:750–759

    Article  CAS  Google Scholar 

Download references

Funding

This work was supported by the National Key Research & Development Plan of China (2018YFD0800700) and the National Science Foundation of China (41671475).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ming Lei.

Additional information

Responsible editor: Yuan Ge

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

ESM 1

(DOCX 558 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wang, X., Lu, X., Yi, X. et al. Changes in soil available cadmium and bacterial communities after fallowing depend on contamination levels. J Soils Sediments 21, 1408–1419 (2021). https://doi.org/10.1007/s11368-021-02877-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11368-021-02877-3

Keywords

Navigation