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C-F...π, F...H, and F...F intermolecular interactions and F-aggregation: Role in crystal engineering of fluoroorganic compounds

  • Proceedings of the XIV Seminar on Intermolecular Interactions and Molecule Conformations
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Abstract

Systematization of the available literature data on C-F...π, F...H, and F...F interactions, namely, statistical studies of the geometry of the corresponding contacts were carried out using the Cambridge Structural Database (CSD) and theoretical quantum-chemical estimations of their energies. The most typical supramolecular motifs (finite or infinite) involving the F atom were revealed based on recent X-ray studies of a few dozens of fluoroarenes carried out at the Novosibirsk Institute of Organic Chemistry. Our recent data were summarized. To assess the role of the above interactions, we used topological analysis of electron density distribution in terms of Bader’s QTAIM theory. Our DFT/PBE/3z quantum-chemical calculations of the interaction energies of molecular pairs in diazafluorene crystals formed by C-F...π, C-F...H, and F...F nonvalent short contacts are presented.

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References

  1. G. R. Desiraju, Chem. Commun., 1475 (1997).

  2. W. D. S. Motherwell, H. L. Ammon, J. D. Dunitz, et. al., Acta Crystallogr. B, 58, 647 (2002).

    Article  Google Scholar 

  3. J. D. Dunitz and A. Gavezzotti, Cryst. Growth Des., 5, 2180 (2005).

    Article  CAS  Google Scholar 

  4. A. Gavezzotti, J. Am. Chem. Soc., 113, 4622 (1991).

    Article  CAS  Google Scholar 

  5. J. Marten, W. Seicher, et. al., Cryst. Eng. Commun., 10, 541 (2008).

    CAS  Google Scholar 

  6. F. Babudri, G. M. Farinola, F. Naso, and R. Ragni, Chem. Commun., 1003 (2007).

  7. F. Leroux, P. Jeschke, and M. Schlosser, Chem. Rev., 105, 827 (2005).

    Article  CAS  Google Scholar 

  8. P. Kirsch and M. Bremer, Angew. Chem., 112, 4384 (2000).

    Article  Google Scholar 

  9. P. Kirsch and M. Bremer, Angew. Chem., Int. Ed., 39, 4216 (2000).

    Article  CAS  Google Scholar 

  10. K. Kanie, K. Mizuno, M. Kuroboshi, et. al., Bull. Chem. Soc. Jpn., 72, 2523 (1999).

    Article  CAS  Google Scholar 

  11. S. McLean, A. Ganong, A. Seymour, et. al., Pharm. Exp. Ther., 227, 900; PubMed ID 8627572 (1996).

    Google Scholar 

  12. K. Gehmann and R. Nyfeler, Chem. Abstr., 114. 223403 (1991).

  13. K. Reichenbacher, I. Heike, H. I. Suss, and J. Jurg Hulliger, Chem. Soc. Rev., 34, 22 (2005).

    Article  Google Scholar 

  14. E. Lork, R. Mews, M. M. Shakirov, et al., Eur. J. Inorg. Chem., 2123 (2001).

  15. J. D. Dunitz, A. Gavezzotti, and W. B. Schweizer, Helv. Chim. Acta, 86, 4073 (2003).

    Article  CAS  Google Scholar 

  16. F. H. Allen, Acta Crystallogr., Sect. B: Struct. Sci., 58, 380 (2002).

    Article  Google Scholar 

  17. E. D’Oria and J. J. Novoa, Cryst. Eng. Commun., 10, 423 (2008).

    Google Scholar 

  18. R. S. Rowland and R. Taylor, J. Phys. Chem., 100, 7384 (1996).

    Article  CAS  Google Scholar 

  19. V. R. Thalladi, H.-Ch. Weiss, D. Bläser, et. al., J. Am. Chem. Soc., 120, 8702 (1998).

    Article  CAS  Google Scholar 

  20. G. R. Desiraju, Acc. Chem. Res., 35, 565 (2002).

    Article  CAS  Google Scholar 

  21. L. C. Pauling, The Nature of the Chemical Bond, Cornell University Press, Ithaca (1960), p. 449.

    Google Scholar 

  22. I. Hyla-Kryspin, G. Haufe, and S. Grimme, Chem. Eur. J., 10, 3411 (2004).

    Article  CAS  Google Scholar 

  23. E. Kryachko and S. Scheiner, J. Phys. Chem. A, 108, 2527 (2004).

    Article  CAS  Google Scholar 

  24. W. Caminati, S. Melandri, P. Moreschini, and P. G. Favero, Angew. Chem., Int. Ed., 38, 2924 (1999).

    Article  CAS  Google Scholar 

  25. J. Parsch and J. W. Engels, J. Am. Chem. Soc., 124, 5664 (2002).

    Article  CAS  Google Scholar 

  26. J. A. K. Howard, V. J. Hoy, D. O’Hagan, and G. T. Smith, Tetrahedron., 38, 12613 (1996).

    Article  Google Scholar 

  27. J. D. Dunitz and W. B. Schweizer, Chem. Eur. J., 12, 6804 (2006).

    Article  CAS  Google Scholar 

  28. I. Yu. Bagryanskaya, Yu. V. Gatilov, A. M. Maksimov, et. al., J. Fluor. Chem., 126, 1281 (2005).

    Article  CAS  Google Scholar 

  29. I. Yu. Bagryanskaya, M. A. Grishina, L. Yu. Safina, et al., J. Struct. Chem., 49, No. 5, 901–908 (2008).

    Article  CAS  Google Scholar 

  30. N. Hayashi, T. Mori, and K. Matsumoto, Chem. Commun., 1905 (1998).

  31. J. N. Williams, Acc. Chem. Res., 26, 593 (1993).

    Article  CAS  Google Scholar 

  32. M. D. Prasana and T. N. Row Guru, Cryst. Eng., 3, 135 (2000).

    Article  Google Scholar 

  33. V. M. Karpov, V. E. PLatonov, I. P. Chuikov, et al., Zh. Org. Khim., 40, No. 3, 448 (2004).

    Google Scholar 

  34. S. Lorenzo, G. R. Lewis, and I. Dance, New J. Chem., 24, 295 (2000).

    Article  CAS  Google Scholar 

  35. R. F. W. Bader, Atoms in Molecules: Quantum Theory, Clarendon Press, Oxford (1990).

    Google Scholar 

  36. R. F. W. Bader, Atoms in Molecules: Quantum Theory, Clarendon Press, Oxford (1990).

    Google Scholar 

  37. R. F. W. Bader, Monat. Chem., 136, 819 (2005).

    Article  CAS  Google Scholar 

  38. N. Ramasubbu, R. Parthasarathy, and P. Murray-Rust, J. Am. Chem. Soc., 108, 4308 (1986).

    Article  CAS  Google Scholar 

  39. A. J. Bondi, Phys. Chem., 68, 441 (1964).

    Article  CAS  Google Scholar 

  40. E. V. Bartashevich, M. R. Abdrakhmanova, V. A. Potemkin, and I. Yu. Bagryanskaya, J. Struct. Chem., 47, No. 1, 114–119 (2006).

    Article  CAS  Google Scholar 

  41. O. V. Grineva and P. M. Zorkii, Zh. Fiz. Khim., 74, No. 11, 1937 (2000).

    CAS  Google Scholar 

  42. A. V. Zibarev, Yu. V. Gatilov, and A. O. Miller, Polyhedron, 11, No. 9, 1137 (1992).

    Article  CAS  Google Scholar 

  43. I. Yu. Bagryanskaya, Yu. V. Gatilov, A. Yu. Makarov, et al., Heteroatom Chem., 10, No. 2, 113 (1999).

    Article  CAS  Google Scholar 

  44. A. Yu. Makarov, I. Yu. Bagryanskaya, F. Van. Blockhuys, et al., Eur. J. Inorg. Chem., No. 1, 77 (2003).

  45. A. Yu. Makarov, K. Tersago, K. Nivesanond, et al., Inorg. Chem., 45, 2221 (2006).

    Article  CAS  Google Scholar 

  46. C. Knapp, E. Lork, R. Mews, and A. V, Zibarev, Eur. J. Inorg. Chem., 2446 (2004).

  47. P. West, J. R. S. Mecozzi, and D. A. Dougherty, J. Phys. Org. Chem., 10, 3479 (1997).

    Article  Google Scholar 

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Correspondence to I. Yu. Bagryanskaya.

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Original Russian Text Copyright © 2009 by T. V. Rybalova and I. Yu. Bagryanskaya

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Translated from Zhurnal Strukturnoi Khimii, Vol. 50, No. 4, pp. 767–779, July–August, 2009.

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Rybalova, T.V., Bagryanskaya, I.Y. C-F...π, F...H, and F...F intermolecular interactions and F-aggregation: Role in crystal engineering of fluoroorganic compounds. J Struct Chem 50, 741–753 (2009). https://doi.org/10.1007/s10947-009-0113-0

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  • DOI: https://doi.org/10.1007/s10947-009-0113-0

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