Abstract
In this research paper, we describe a study on the inclusion complex formation between both of the most important antioxidants Carvacrol, Thymol and beta-cyclodextrin (\(\beta-CD\)). We use docking and quantum chemical calculations to ascertain the capability of the nano hydrophobic cavity of beta-cyclodextrin (\(\beta-CD\)) to encapsulate Carvacrol and Thymol compounds (X), the formation of 1:1 a stoichiometry ratio of host-guest inclusion complex (\(X@\beta-CD\)) in the gas and solution phase using different quantum mechanical methods including semi-empirical (PM6), ab initio (HF), and density functional theory (B3LYP), all HF and DFT calculations have been performed with the 6-31G and 6-31+G(d) basis sets. Two modes of complexation were taken into consideration ‘orientation’. The results obtained with B3LYP/6-31+G(d) method clearly indicate that the complexes formed are energetically favored with or without solvent. Two groups of conformers were found.
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Ruberto, G., Baratta, M.T., Deans, S.G., Dorman, H.J.: Antioxidant and antimicrobial activity of Foeniculum vulgare and Crithmum maritimum essential oils. Planta Med. 66(8), 687–693 (2000). doi:10.1055/s-2000-9773
Ran, C., Hu, J., Liu, W., Liu, Z., He, S., Dan, B.C., Diem, N.N., Ooi, E.L., Zhou, Z.: Thymol and carvacrol affect hybrid tilapia through the combination of direct stimulation and an intestinal microbiota-mediated effect: insights from a germ-free zebrafish model. J. Nutr. 146(5), 1132–1140 (2016). doi:10.3945/jn.115.229377
Cossu, A., Wang, M.S., Chaudhari, A., Nitin, N.: Antifungal activity against Candida albicans of starch Pickering emulsion with thymol or amphotericin B in suspension and calcium alginate films. Int. J. Pharm. 493(1–2), 233–242 (2015). doi:10.1016/j.ijpharm.2015.07.065
Maisanaba, S., Prieto, A.I., Puerto, M., Gutirrez-Praena, D., Demir, E., Marcos, R., Camen, A.M.: In vitro genotoxicity testing of carvacrol and thymol using the micronucleus and mouse lymphoma assays. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 784–785, 37–44 (2015). doi:10.1016/j.mrgentox.2015.05.005
Del Toro-Snchez, C.L., Ayala-Zavala, J.F., Machi, L., Santacruz, H., Villegas-Ochoa, M.A., Alvarez-Parrilla, E., Gonzlez-Aguilar, G.A.: Controlled release of antifungal volatiles of thyme essential oil from \(\beta\)-cyclodextrin capsules. J. Incl. Phenom. Macrocycl. Chem. 67(3), 431–441 (2010). doi:10.1007/s10847-009-9726-3
Mulinacci, N., Melani, F., Vincieri, F.F., Mazzi, G., Romani, A.: 1H-NMR NOE and molecular modelling to characterize thymol and carvacrol \(\beta\)-cyclodextrin complexes. Int. J. Pharm. 128(1), 81–88 (1996). doi:10.1016/0378-5173(95)04224-5
Azirak, S., Rencuzogullari, E.: The in vivo genotoxic effects of carvacrol and thymol in rat bone marrow cells. Environ. Toxicol. 23(6), 728–735 (2008). doi:10.1002/tox.20380
Maeda, H., Iga, Y., Nakayama, H.: Characterization of inclusion complexes of betahistine with \(\beta\)-cyclodextrin and evaluation of their anti-humidity properties. J. Incl. Phenom. Macrocycl. Chem. 86(3), 337–342 (2016). doi:10.1007/s10847-016-0658-4
Haloci, E., Toska, V., Shkreli, R., Goci, E., Vertuani, S., Manfredini, S.: Encapsulation of Satureja montana essential oil in \(\beta\)-cyclodextrin. J. Incl. Phenom. Macrocycl. Chem. 80(1), 147–153 (2014). doi:10.1007/s10847-014-0437-z
Fromming, K.-H., Szejtli, Jz: Cyclodextrins in Pharmacy. Topics in Inclusion Science, vol. 5. Kluwer Academic Publishers, Dordrecht (1994)
Ikotun, B.D., Mishra, S.B., Fanourakis, G.C.: Modification of the hydration products of hydrated cement paste by fly ash, \(\beta\)-cyclodextrin and fly ash-\(\beta\)-cyclodextrin composite. J. Incl. Phenom. Macrocycl. Chem. 87(1), 219–237 (2017). doi:10.1007/s10847-017-0692-x
Regdon, G., Bcskay, I., Gergely, ., Hdi, K., Kata, M.: Influence of Cyclodextrins on the in Vitro Drug Liberation of Rectal Suppositories Containing Benzodiazepine Derivates. In: Szejtli, J., Szente, L. (eds.) Proceedings of the Eighth International Symposium on Cyclodextrins: Budapest, Hungary, March 31-April 2, 1996. pp. 435-438. Springer Netherlands, Dordrecht (1996)
Loftsson, T., Duchne, D.: Cyclodextrins and their pharmaceutical applications. Int. J. Pharm. 329(1–2), 1–11 (2007). doi:10.1016/j.ijpharm.2006.10.044
Gloe, K.: Macrocyclic Chemistry : Current Trends and Future Perspectives. Springer, Dordrecht (2005)
Jin, Z.-Y.: Cyclodextrin Chemistry: Preparation and Application. World Scientific, Singapore (2013)
Szejtli, J.: Cycldextrins and Their Inclusion Complexes. Akademia Kiado, Budapest (1982)
Szejtli, J.: Cyclodextrins : 1st international symposium: Papers. Reidel, Dordercht (1982)
Szejtli, J., Osa, T.: Comprehensive Supramolecular Chemistry. Pergamon, Oxford (1996)
Albrecht, M., Shang, Y., Hasui, K., Gossen, V., Raabe, G., Tahara, K., Tobe, Y.: Tuning the size of supramolecular M4L4 tetrahedra by ligand connectivity. Dalton Trans. 41(31), 9316–9322 (2012)
Cucinotta, V., Grasso, G., Pedotti, S., Rizzarelli, E., Vecchio, G.: Three-dimensional cyclodextrin: a new class of hosts by trehalose capping of \(\beta\)-cyclodextrin. J. Incl. Phenom. Mol. Recognit. Chem. 25(1), 39–42 (1996). doi:10.1007/bf01041532
Junco, S., Casimiro, T., Ribeiro, N., Nunes Da Ponte, M., Cabral Marques, H.M.: Optimisation of supercritical carbon dioxide systems for complexation of naproxen: beta-cyclodextrin. J. Incl. Phenom. Macrocycl. Chem. 44(1), 69–73 (2002). doi:10.1023/a:1023028815180
Pereira, R.A., da Silva Borges, W.M., Peraro, C.R., Anconi, C.P.A.: Theoretical inclusion of deprotonated 2,4-D and dicamba pesticides in \(\beta\)-cyclodextrin. J. Incl. Phenom. Macrocycl. Chem. 86(3), 343–349 (2016). doi:10.1007/s10847-016-0665-5
Ikeda, Y., Motoune, S., Marumoto, A., Sonoda, Y., Hirayama, F., Arima, H., Uekama, K.: Effect of 2-Hydroxypropyl-\(\beta\)-cyclodextrin on release rate of metoprolol from ternary metoprolol/2-hydroxypropyl-\(\beta\)-cyclodextrin/ethylcellulose tablets. J. Incl. Phenom. Macrocycl. Chem. 44(1), 141–144 (2002). doi:10.1023/a:1023082226992
Bogdan, M., Floare, C.G., Buimaga-Iarinca, L., Morari, C., Pirnau, A.: NMR study and computational assays of meclofenamic Na salt and \(\beta\)-cyclodextrin inclusion complex. J. Incl. Phenom. Macrocycl. Chem. 85(1), 111–120 (2016). doi:10.1007/s10847-016-0610-7
Guo, X., Wang, Z., Zuo, L., Zhou, Z., Guo, X., Sun, T.: Quantitative prediction of enantioseparation using β-cyclodextrin derivatives as chiral selectors in capillary electrophoresis. Analyst 139(24), 6511–6519 (2014). doi:10.1039/C4AN01265H
Ren, B., Jiang, B., Hu, R., Zhang, M., Chen, H., Ma, J., Sun, Y., Jia, L., Zheng, J.: HP-β-cyclodextrin as an inhibitor of amyloid-β aggregation and toxicity. Phys. Chem. Chem. Phys. 18(30), 20476–20485 (2016). doi:10.1039/C6CP03582E
Simoes, S.M.N., Rey-Rico, A., Concheiro, A., Alvarez-Lorenzo, C.: Supramolecular cyclodextrin-based drug nanocarriers. Chem. Commun. 51(29), 6275–6289 (2015). doi:10.1039/C4CC10388B
Frijlink, H.W., Visser, J., Hefting, N.R., Oosting, R., Meijer, D.K.F., Lerk, C.F.: The pharmacokinetics of \(\beta\)-cyclodextrin and hydroxypropyl-\(\beta\)-cyclodextrin in the rat. Pharm. Res. 7(12), 1248–1252 (1990). doi:10.1023/a:1015929720063
Abdelmalek, L., Fatiha, M., Leila, N., Mouna, C., Nora, M., Djameleddine, K.: Computational study of inclusion complex formation between carvacrol and \(\beta\)-cyclodextrin in vacuum and in water: charge transfer, electronic transitions and NBO analysis. J. Mol. Liq. 224, 62–71 (2016). doi:10.1016/j.molliq.2016.09.053
Mathapa, B.G., Paunov, V.N.: Cyclodextrin stabilised emulsions and cyclodextrinosomes. Phys. Chem. Chem. Phys. 15(41), 17903–17914 (2013). doi:10.1039/C3CP52116H
Takahashi, K., Ohtsuka, Y., Nakada, S., Hattori, K.: Syntheses of 6N(N-formyl-D-phenylalanyl)-deoxyamino-\(\beta\)-cyclodextrin and 6N(N-formyl-L-phenylalanyl)deoxyamino-\(\beta\)-cyclodextrin and their inclusion behavior. J. Incl. Phenom. Mol. Recognit. Chem. 10(1), 63–68 (1991). doi:10.1007/bf01041640
Tavornvipas, S., Arima, H., Hirayama, F., Uekama, K., Ishiguro, T., Oka, M., Hamayasu, K., Hashimoto, H.: Some pharmaceutical properties of a new branched cyclodextrin, 6-O-(4-O- -D-glucuronyl)-D-glucosyl \(\beta\)-cyclodextrin. J. Incl. Phenom. Macrocycl. Chem. 44(1), 391–394 (2002). doi:10.1023/a:1023067232328
Donze, C., Coleman, A.W.: \(\beta\)-CD inclusion complexes: relative selectivity of terpene and aromatic guest molecules studied by competitive inclusion experiments. J. Incl. Phenom. Mol. Recognit. Chem. 16(1), 1–15 (1993). doi:10.1007/bf00708758
Fergoug, T., Junquera, E., Aicart, E.: Effect of temperature on the encapsulation of the drug tetracaine hydrochloride by \(\beta\)-cyclodextrin and hydoxypropyl-\(\beta\)-cyclodextrin in aqueous medium. J. Incl. Phenom. Macrocycl. Chem. 47(1), 65–70 (2003). doi:10.1023/B:JIPH.0000003877.21966.6d
Menuel, S., Bertaut, E., Monflier, E., Hapiot, F.: Cyclodextrin-based PNN supramolecular assemblies: a new class of pincer-type ligands for aqueous organometallic catalysis. Dalton Trans. 44(30), 13504–13512 (2015). doi:10.1039/C5DT01825K
Nageswara Rao, R., Santhakumar, K.: Cyclodextrin assisted enantiomeric recognition of emtricitabine by 19F NMR spectroscopy. N J Chem. 40(10), 8408–8417 (2016). doi:10.1039/C6NJ00356G
Preiss, A., Mehnert, W., Frmming, K.-H.: The inclusion compound of emulsified cetostearyl alcohol with \(\beta\)-cyclodextrin and a competitive reaction with a hydrocortisone/\(\beta\)-cyclodextrin inclusion compound in an oil-in-water cream. J. Incl. Phenom. Mol. Recognit. Chem. 18(4), 331–339 (1994). doi:10.1007/bf00707382
Bethanis, K., Tzamalis, P., Tsorteki, F., Kokkinou, A., Christoforides, E., Mentzafos, D.: Structural study of the inclusion compounds of thymol, carvacrol and eugenol in \(\beta\)-cyclodextrin by X-ray crystallography. J. Incl. Phenom. Macrocycl. Chem. 77(1), 163–173 (2013). doi:10.1007/s10847-012-0230-9
Sakina, H., Abdelaziz, B., Leila, N., Imene, D., Fatiha, M., Eddine, K.D.: Molecular docking study on \(\beta\)-cyclodextrin Interactions of metobromuron and [3-(p-bromophenyl)-1-methoxy-1-methylurea]. J. Incl. Phenom. Macrocycl. Chem. 74(1), 191–200 (2012). doi:10.1007/s10847-011-0100-x
Nascimento, C.S., Anconi, C.P.A., Lopes, J.F., Santos, H.F.D., De Almeida, W.B.: An efficient methodology to study cyclodextrin clusters: application to -CD hydrated monomer, dimer, trimer and tetramer. J. Incl. Phenom. Macrocycl. Chem. 59(3), 265–277 (2007). doi:10.1007/s10847-007-9320-5
P. D. B. RCSB, DB03995. https://www3.rcsb.org/ligand/BCD
Evans, D. A., Rubenstein, S.: Chemical structure drawing software package (2012)
Stewart, J.J.: Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements. J. Mol. Model. 13(12), 1173–1213 (2007). doi:10.1007/s00894-007-0233-4
Roothaan, C.C.J.: New developments in molecular orbital theory. Rev. Mod. Phys. 23(2), 69–89 (1951)
Binkley, J.S., Pople, J.A., Hehre, W.J.: Self-consistent molecular orbital methods. 21. Small split-valence basis sets for first-row elements. J. Am. Chem. Soc. 102(3), 939–947 (1980). doi:10.1021/ja00523a008
Hohenberg, P., Kohn, W.: Inhomogeneous electron gas. Phys. Rev. 136(3B), B864–B871 (1964)
Becke, A.D.: Density-functional exchange-energy approximation with correct asymptotic behavior. Phys. Rev. A 38(6), 3098–3100 (1988)
Becke, A.D.: A new mixing of Hartree-Fock and local density functional theories. J. Chem. Phys. 98(2), 1372–1377 (1993). doi:10.1063/1.464304
Becke, A.D.: Density functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 98(7), 5648–5652 (1993). doi:10.1063/1.464913
Marenich, A.V., Cramer, C.J., Truhlar, D.G.: Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. J. Phys. Chem. B 113(18), 6378–6396 (2009). doi:10.1021/jp810292n
Boys, S.F., Bernardi, F.: The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Mol. Phys. 19(4), 553–566 (1970). doi:10.1080/00268977000101561
Simon, S., Duran, M., Dannenberg, J.J.: How does basis set superposition error change the potential surfaces for hydrogen bonded dimers? J. Chem. Phys. 105(24), 11024–11031 (1996). doi:10.1063/1.472902
Kahwajy, N., Nematollahi, A., Kim, R.R., Church, W.B., Wheate, N.J.: Comparative macrocycle binding of the anticancer drug phenanthriplatin by cucurbit[n]urils, beta-cyclodextrin and para-sulfonatocalix[4]arene: a 1H NMR and molecular modelling study. J. Incl. Phenom. Macrocycl. Chem. 87(3), 251–258 (2017)
Bensouilah, N., Boutemeur-Kheddis, B., Bensouilah, H., Meddour, I., Abdaoui, M.: Host-guest complex of nabumetone: beta-cyclodextrin: quantum chemical study and QTAIM analysis. J. Incl. Phenom. Macrocycl. Chem. 87(1), 191–206 (2017). doi:10.1007/s10847-016-0690-4
Weinhold, F., Landis, C.R.: Discovering chemistry with natural bond orbitals. Wiley, Chichester (2012)
Weinhold, F., Landis, C.R.: Natural bond orbitals and extensions of localized bonding concepts. Chem. Educ. Res. Pract. 2(2), 91–104 (2001). doi:10.1039/B1RP90011K
Reed, A.E., Curtiss, L.A., Weinhold, F.: Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem. Rev. 88(6), 899–926 (1988). doi:10.1021/cr00088a005
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Scalmani, G., Barone, V., Mennucci, B., Petersson, G.A., Nakatsuji, H., Caricato, M., Li, X., Hratchian, H.P., Izmaylov, A.F., Bloino, J., Zheng, G., Sonnenberg, J.L., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Vreven, T., Montgomery Jr., J.A., Peralta, J.E., Ogliaro, F., Bearpark, M.J., Heyd, J., Brothers, E.N., Kudin, K.N., Staroverov, V.N., Kobayashi, R., Normand, J., Raghavachari, K., Rendell, A.P., Burant, J.C., Iyengar, S.S., Tomasi, J., Cossi, M., Rega, N., Millam, N.J., Klene, M., Knox, J.E., Cross, J.B., Bakken, V., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R.E., Yazyev, O., Austin, A.J., Cammi, R., Pomelli, C., Ochterski, J.W., Martin, R.L., Morokuma, K., Zakrzewski, V.G., Voth, G.A., Salvador, P., Dannenberg, J.J., Dapprich, S., Daniels, A.D., Farkas, O., Foresman, J.B., Ortiz, J.V., Cioslowski, J., Fox, D.J.: Gaussian 09. Gaussian, Inc., Wallingford (2009)
Fatiha, M., Leila, L., Eddine, K.D., Leila, N.: Computational investigation of enol/keto chloramphenicol with \(\beta\)-cyclodextrin. J. Incl. Phenom. Macrocycl. Chem. 77(1), 421–427 (2013). doi:10.1007/s10847-012-0262-1
Koopmans, T.: ber die Zuordnung von Wellenfunktionen und Eigenwerten zu den Einzelnen Elektronen Eines Atoms. Physica 1(1–6), 104–113 (1934). doi:10.1016/S0031-8914(34)90011-2
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The authors thanks ministry of higher education and scientific research of algeria (MESRS) and the HPC ressources of UCI-UABT of the University Abou Bekr Belkaïd of Tlemcen for financial support in this research.
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Guendouzi, A., Mekelleche, S.M., Brahim, H. et al. Quantitative conformational stability host-guest complex of Carvacrol and Thymol with β-cyclodextrin: a theoretical investigation. J Incl Phenom Macrocycl Chem 89, 143–155 (2017). https://doi.org/10.1007/s10847-017-0740-6
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DOI: https://doi.org/10.1007/s10847-017-0740-6