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Expression profile and mitochondrial colocalization of Tdp1 in peripheral human tissues

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Abstract

Tyrosyl-DNA phosphodiesterase 1 (Tdp1) is a DNA repair enzyme that processes blocked 3′ ends of DNA breaks. Functional loss of Tdp1 causes spinocerebellar ataxia with axonal neuropathy type 1 (SCAN1). Based on the prominent cytoplasmic expression of Tdp1 in the neurons presumably affected in SCAN1, we hypothesized that Tdp1 participates in the repair of mitochondrial DNA. As a step toward testing this hypothesis, we profiled Tdp1 expression in different human tissues by immunohistochemistry and immunofluorescence respectively and determined whether Tdp1 was expressed in the cytoplasm of tissues other than the neurons. We found that Tdp1 was ubiquitously expressed and present in the cytoplasm of many cell types. Within human skeletal muscle and multiple mouse tissues, Tdp1 partially colocalized with the mitochondria. In cultured human dermal fibroblasts, Tdp1 redistributed to the cytoplasm and partially colocalized with mitochondria following oxidative stress. These studies suggest that one role of cytoplasmic Tdp1 is the repair of mitochondrial DNA lesions arising from oxidative stress.

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References

  • Abou-Sleiman PM, Muqit MM, Wood NW (2006) Expanding insights of mitochondrial dysfunction in Parkinson’s disease. Nat Rev Neurosci 7(3):207–219. doi:10.1038/nrn1868

    Article  PubMed  CAS  Google Scholar 

  • Ames BN, Shigenaga MK, Hagen TM (1993) Oxidants, antioxidants, and the degenerative diseases of aging. Proc Natl Acad Sci USA 90(17):7915–7922

    Article  PubMed  CAS  Google Scholar 

  • Chiang SC, Carroll J, El-Khamisy SF (2010) TDP1 serine 81 promotes interaction with DNA ligase IIIalpha and facilitates cell survival following DNA damage. Cell Cycle 9(3):588–595

    Article  PubMed  CAS  Google Scholar 

  • Das BB, Dexheimer TS, Maddali K, Pommier Y (2010) Role of tyrosyl-DNA phosphodiesterase (TDP1) in mitochondria. Proc Natl Acad Sci USA 107(46):19790–19795. doi:10.1073/pnas.1009814107

    Article  PubMed  CAS  Google Scholar 

  • Davies DR, Interthal H, Champoux JJ, Hol WG (2002) The crystal structure of human tyrosyl-DNA phosphodiesterase, Tdp1. Structure 10(2):237–248

    Article  PubMed  CAS  Google Scholar 

  • Dexheimer TS, Stephen AG, Fivash MJ, Fisher RJ, Pommier Y (2010) The DNA binding and 3′-end preferential activity of human tyrosyl-DNA phosphodiesterase. Nucleic Acids Res 38(7):2444–2452. doi:10.1093/nar/gkp1206

    Article  PubMed  CAS  Google Scholar 

  • Dimauro S (2011) A history of mitochondrial diseases. J Inherit Metab Dis 34(2):261–276. doi:10.1007/s10545-010-9082-x

    Article  PubMed  CAS  Google Scholar 

  • El-Khamisy SF, Saifi GM, Weinfeld M, Johansson F, Helleday T, Lupski JR, Caldecott KW (2005) Defective DNA single-strand break repair in spinocerebellar ataxia with axonal neuropathy-1. Nature 434(7029):108–113. doi:10.1038/nature03314

    Article  PubMed  CAS  Google Scholar 

  • El-Khamisy SF, Hartsuiker E, Caldecott KW (2007) TDP1 facilitates repair of ionizing radiation-induced DNA single-strand breaks. DNA Repair 6(10):1485–1495. doi:10.1016/j.dnarep.2007.04.015

    Article  PubMed  CAS  Google Scholar 

  • El-Khamisy SF, Katyal S, Patel P, Ju L, McKinnon PJ, Caldecott KW (2009) Synergistic decrease of DNA single-strand break repair rates in mouse neural cells lacking both Tdp1 and aprataxin. DNA Repair 8(6):760–766. doi:10.1016/j.dnarep.2009.02.002

    Article  PubMed  CAS  Google Scholar 

  • Fam A, Chowdhury MK, Boerkoel CF (2012) Spinocerebellar ataxia with axonal neuropathy: a disorder of nuclear and mitochondrial DNA repair. In: Spinocerebellar Ataxia. In Tech (in press)

  • Graham J, Ford T, Rickwood D (1994) The preparation of subcellular organelles from mouse liver in self-generated gradients of iodixanol. Anal Biochem 220(2):367–373. doi:10.1006/abio.1994.1351

    Article  PubMed  CAS  Google Scholar 

  • Hafezparast M, Ahmad-Annuar A, Wood NW, Tabrizi SJ, Fisher EM (2002) Mouse models for neurological disease. Lancet Neurol 1(4):215–224

    Article  PubMed  Google Scholar 

  • Hawkins AJ, Subler MA, Akopiants K, Wiley JL, Taylor SM, Rice AC, Windle JJ, Valerie K, Povirk LF (2009) In vitro complementation of Tdp1 deficiency indicates a stabilized enzyme-DNA adduct from tyrosyl but not glycolate lesions as a consequence of the SCAN1 mutation. DNA Repair 8(5):654–663. doi:10.1016/j.dnarep.2008.12.012

    Article  PubMed  CAS  Google Scholar 

  • Hirano R, Interthal H, Huang C, Nakamura T, Deguchi K, Choi K, Bhattacharjee MB, Arimura K, Umehara F, Izumo S, Northrop JL, Salih MA, Inoue K, Armstrong DL, Champoux JJ, Takashima H, Boerkoel CF (2007) Spinocerebellar ataxia with axonal neuropathy: consequence of a Tdp1 recessive neomorphic mutation? EMBO J 26(22):4732–4743. doi:10.1038/sj.emboj.7601885

    Article  PubMed  CAS  Google Scholar 

  • Hudson EK, Hogue BA, Souza-Pinto NC, Croteau DL, Anson RM, Bohr VA, Hansford RG (1998) Age-associated change in mitochondrial DNA damage. Free Radic Res 29(6):573–579

    Article  PubMed  CAS  Google Scholar 

  • Hudson JJ, Chiang SC, Wells OS, Rookyard C, El-Khamisy SF (2012) SUMO modification of the neuroprotective protein TDP1 facilitates chromosomal single-strand break repair. Nat Commun 3:733. doi:10.1038/ncomms1739

    Article  PubMed  Google Scholar 

  • Interthal H, Chen HJ, Champoux JJ (2005a) Human Tdp1 cleaves a broad spectrum of substrates, including phosphoamide linkages. J Biol Chem 280(43):36518–36528. doi:10.1074/jbc.M508898200

    Article  PubMed  CAS  Google Scholar 

  • Interthal H, Chen HJ, Kehl-Fie TE, Zotzmann J, Leppard JB, Champoux JJ (2005b) SCAN1 mutant Tdp1 accumulates the enzyme–DNA intermediate and causes camptothecin hypersensitivity. EMBO J 24(12):2224–2233. doi:10.1038/sj.emboj.7600694

    Article  PubMed  CAS  Google Scholar 

  • Johns DR (1995) Seminars in medicine of the Beth Israel Hospital, Boston: mitochondrial DNA and disease. N Engl J Med 333(10):638–644. doi:10.1056/NEJM199509073331007

    Article  PubMed  CAS  Google Scholar 

  • Kamenisch Y, Fousteri M, Knoch J, von Thaler AK, Fehrenbacher B, Kato H, Becker T, Dolle ME, Kuiper R, Majora M, Schaller M, van der Horst GT, van Steeg H, Rocken M, Rapaport D, Krutmann J, Mullenders LH, Berneburg M (2010) Proteins of nucleotide and base excision repair pathways interact in mitochondria to protect from loss of subcutaneous fat, a hallmark of aging. J Exp Med 207(2):379–390. doi:10.1084/jem.20091834

    Article  PubMed  CAS  Google Scholar 

  • Katyal S, El-Khamisy SF, Russell HR, Li Y, Ju L, Caldecott KW, McKinnon PJ (2007) TDP1 facilitates chromosomal single-strand break repair in neurons and is neuroprotective in vivo. EMBO J 26(22):4720–4731. doi:10.1038/sj.emboj.7601869

    Article  PubMed  CAS  Google Scholar 

  • Koene S, Smeitink J (2011) Mitochondrial Medicine: a clinical guideline, 1st edn. Khondrion, Nijmegen

    Google Scholar 

  • Lakshmipathy U, Campbell C (1999) Double strand break rejoining by mammalian mitochondrial extracts. Nucleic Acids Res 27(4):1198–1204

    Article  PubMed  CAS  Google Scholar 

  • Larsen NB, Rasmussen M, Rasmussen LJ (2005) Nuclear and mitochondrial DNA repair: similar pathways? Mitochondrion 5(2):89–108. doi:10.1016/j.mito.2005.02.002

    Article  PubMed  CAS  Google Scholar 

  • Liu C, Pouliot JJ, Nash HA (2004) The role of TDP1 from budding yeast in the repair of DNA damage. DNA Repair 3(6):593–601. doi:10.1016/j.dnarep.2004.03.030

    Article  PubMed  CAS  Google Scholar 

  • Mecocci P, MacGarvey U, Kaufman AE, Koontz D, Shoffner JM, Wallace DC, Beal MF (1993) Oxidative damage to mitochondrial DNA shows marked age-dependent increases in human brain. Ann Neurol 34(4):609–616. doi:10.1002/ana.410340416

    Article  PubMed  CAS  Google Scholar 

  • Moreira PI, Cardoso SM, Santos MS, Oliveira CR (2006) The key role of mitochondria in Alzheimer’s disease. J Alzheimers Dis 9(2):101–110

    PubMed  CAS  Google Scholar 

  • Ogata T, Yamasaki Y (1997) Ultra-high-resolution scanning electron microscopy of mitochondria and sarcoplasmic reticulum arrangement in human red, white, and intermediate muscle fibers. Anat Rec 248(2):214–223

    Article  PubMed  CAS  Google Scholar 

  • Pouliot JJ, Yao KC, Robertson CA, Nash HA (1999) Yeast gene for a Tyr-DNA phosphodiesterase that repairs topoisomerase I complexes. Science 286(5439):552–555

    Article  PubMed  CAS  Google Scholar 

  • Raymond AC, Staker BL, Burgin AB Jr (2005) Substrate specificity of tyrosyl-DNA phosphodiesterase I (Tdp1). J Biol Chem 280(23):22029–22035. doi:10.1074/jbc.M502148200

    Article  PubMed  CAS  Google Scholar 

  • Rebrin I, Kamzalov S, Sohal RS (2003) Effects of age and caloric restriction on glutathione redox state in mice. Free Radic Biol Med 35(6):626–635

    Article  PubMed  CAS  Google Scholar 

  • Silhavy TJ, Benson SA, Emr SD (1983) Mechanisms of protein localization. Microbiol Rev 47(3):313–344

    PubMed  CAS  Google Scholar 

  • Takashima H, Boerkoel CF, John J, Saifi GM, Salih MA, Armstrong D, Mao Y, Quiocho FA, Roa BB, Nakagawa M, Stockton DW, Lupski JR (2002) Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy. Nat Genet 32(2):267–272. doi:10.1038/ng987

    Article  PubMed  CAS  Google Scholar 

  • Thorburn DR, Chow CW, Kirby DM (2004) Respiratory chain enzyme analysis in muscle and liver. Mitochondrion 4(5–6):363–375. doi:10.1016/j.mito.2004.07.003

    Article  PubMed  CAS  Google Scholar 

  • Walton C, Turashvili G, Hirano R, Aparicio S, Boerkoel CF (2009) Defining the role of Tyrosl-DNA phosphodiesterrase (Tdp1) in human disease. In: DNA repair and Mutagenesis: from molecular structure to human disease, June 5, 2009

  • Yakes FM, Van Houten B (1997) Mitochondrial DNA damage is more extensive and persists longer than nuclear DNA damage in human cells following oxidative stress. Proc Natl Acad Sci USA 94(2):514–519

    Article  PubMed  CAS  Google Scholar 

  • Zhang H, Barcelo JM, Lee B, Kohlhagen G, Zimonjic DB, Popescu NC, Pommier Y (2001) Human mitochondrial topoisomerase I. Proc Natl Acad Sci USA 98(19):10608–10613. doi:10.1073/pnas.191321998

    Article  PubMed  CAS  Google Scholar 

  • Zhou W, Zhang Y, Hosch MS, Lang A, Zwacka RM, Engelhardt JF (2001) Subcellular site of superoxide dismutase expression differentially controls AP-1 activity and injury in mouse liver following ischemia/reperfusion. Hepatology 33(4):902–914. doi:10.1053/jhep.2001.23073

    Article  PubMed  CAS  Google Scholar 

  • Zhou T, Lee JW, Tatavarthi H, Lupski JR, Valerie K, Povirk LF (2005) Deficiency in 3′-phosphoglycolate processing in human cells with a hereditary mutation in tyrosyl-DNA phosphodiesterase (TDP1). Nucleic Acids Res 33(1):289–297. doi:10.1093/nar/gki170

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

The authors thank Dr. Alireza Baradaran-Heravi and Marie Morimoto for their criticism, suggestions and review of this manuscript. This work was supported in part by a United Mitochondrial Disease Foundation Award (C.F.B.), a Child & Family Research Institute Establishment Award (C.F.B.) and a Canadian Institutes of Health Research Award (248178, C.F.B.). M.K.C. was supported by a Michael Cuccione Studentship for Oncology Research. C.F.B. is a scholar of the Michael Smith Foundation for Health Research and a Clinical Investigator of the Child & Family Research Institute.

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Correspondence to Cornelius F. Boerkoel.

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Hok Khim Fam, Miraj K. Chowdhury and Cheryl Walton have contributed equally to this work.

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Fam, H.K., Chowdhury, M.K., Walton, C. et al. Expression profile and mitochondrial colocalization of Tdp1 in peripheral human tissues. J Mol Hist 44, 481–494 (2013). https://doi.org/10.1007/s10735-013-9496-5

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