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Variable ITS-copy number at different developmental stages of Meloidogyne hapla and M. chitwoodi

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Abstract

Quantitative polymerase chain reaction (qPCR) can be used for the accurate quantification of plant-parasitic nematodes from soil samples. Unlike the traditional Baermann funnel and centrifugal flotation techniques followed by visual enumeration, all developmental stages of plant-parasitic nematodes can be detected and quantified by using qPCR. However, little is known about the amount of DNA between different stages of plant-parasitic nematodes. Here, we show that ITS-copy number varies with developmental stage of Meloidogyne chitwoodi and M. hapla. The number of copies of ITS was lower in cell-stage eggs (51 ± 7.4 for M. hapla and 31 ± 6.0 for M. chitwoodi) than in second-stage juveniles (1345 ± 130.6 for M. hapla and 1036 ± 140.3 for M. chitwoodi) and females (19,508 ± 3367.3 for M. hapla and 9049 ± 316.7 for M. chitwoodi).

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References

  • Berry, S. D., Fargette, M., Spaull, V. W., Morand, S., & Cadet, P. (2008). Detection and quantification of root-knot nematode (Meloidogyne javanica), lesion nematode (Pratylenchus zeae) and dagger nematode (Xiphinema elongatum) parasites of sugarcane using real-time PCR. Molecular and Cellular Probes, 22, 168–176.

    Article  CAS  PubMed  Google Scholar 

  • CABI (2018). Invasive species. Retrieved March 1, 2018, from http://www.cabi.org/isc. Accessed 1 March 2018.

  • Chan, Y. L., Cai, D., Taylor, P. W. J., Chan, M. T., & Yeh, K. W. (2010). Adverse effect of the chitinolytic enzyme PjCHI-1 in transgenic tomato on egg mass production and embryonic development of Meloidogyne incognita. Plant Pathology, 59, 922–930.

    Article  CAS  Google Scholar 

  • Cunha, A., Azevedo, R. B. R., Emmons, S. W., & Leroi, A. M. (1999). Variable cell number in nematodes. Nature, 402, 253.

    Article  CAS  PubMed  Google Scholar 

  • De Haan, E. G., Dekker, C. C. E. M., Tameling, W. I. L., Den Nijs, L. J. M. F., Van Den Bovenkamp, G. W., & Kooman-Gersmann, M. (2014). The MeloTuber test: A real-time TaqMan PCR-based assay to detect the root-knot nematodes Meloidogyne chitwoodi and M. fallax directly in potato tubers. Bulletin OEPP/EPPO, 44, 166–175.

    Article  Google Scholar 

  • De Weerdt, M., Kox, L., Waeyenberge, L., Viaene, N., & Zijlstra, C. (2011). A real-time PCR assay to identify Meloidogyne minor. Journal of Phytopathology, 159, 80–84.

    Article  CAS  Google Scholar 

  • Evans, A. A. F., & Perry, R. (2009). Survival mechanisms. In R. N. Perry, M. Moens, & J. L. Starr (Eds.), Root-knot nematodes (pp. 201–222). Wallingford: CABI Publishing.

    Chapter  Google Scholar 

  • Ferris, V. R., Ferris, J. M., & Faghihi, J. (1993). Variation in spacer ribosomal DNA in some cyst-forming species of plant parasitic nematodes. Fundamental and Applied Nematology, 16, 177–184.

    Google Scholar 

  • Goto, K., Sato, E., Gang, L. F., Toyota, K., & Sugito, T. (2010). Comparison of calibration curves prepared by soil compaction and ball milling methods for direct quantification of the potato cyst nematode Globodera rostochiensis in soil. Nematological Research, 40, 41–45.

    Article  Google Scholar 

  • Greco, N., & Di Vito, M. (2009). Population dynamics and damage levels. In R. N. Perry, M. Moens, & J. L. Starr (Eds.), Root-knot nematodes (pp. 246–274). Wallingford: CABI Publishing.

    Chapter  Google Scholar 

  • Gugino, B. K., Abawi, G. S., & Ludwig, J. W. (2006). Damage and management of Meloidogyne hapla using oxamyl on carrot in New York. Journal of Nematology, 38, 483–490.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Holeva, R., Phillips, M. S., Neilson, R., Brown, D. J. F., Young, V., Boutsika, K., & Blok, V. C. (2006). Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes, 20, 203–211.

    Article  CAS  PubMed  Google Scholar 

  • Hugall, A., Stanton, J., & Moritz, C. (1999). Reticulate evaluation and the origins of ribosomal internal transcribed spacer diversity in apomictic Meloidogyne. Molecular Biology and Evolution, 16, 157–164.

    Article  CAS  PubMed  Google Scholar 

  • Jesus, D. S., Oliveira, C. M. G., Roberts, D., Blok, V., Neilson, R., Prior, T., Balbino, H. M., MacKenzie, K. M., & Oliveira, R. D. L. (2016). Morphological and molecular chracterisation of Aphelenchoides besseyi and A. fujianensis (Nematoda: Aphelenchoididae) from rice and forage grass seeds in Brazil. Nematology, 18, 337–356.

    Article  CAS  Google Scholar 

  • Jones, J. T., Haegeman, A., Danchin, E. G., Gaur, H. S., Helder, J., Jones, M. G., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J. E., Wesemael, W. M., & Perry, R. N. (2013). Top 10 plant-parasitic nematodes in molecular plant pathology. Molecular Plant Pathology, 14, 946–961.

    Article  PubMed  Google Scholar 

  • Karssen, G., Wesemael, W., & Moens, M. (2013). Root-knot nematodes. In R. N. Perry, M. Moens, & J. L. Starr (Eds.), Root-knot nematodes (pp. 73–108). Wallingford: CABI Publishing.

    Google Scholar 

  • Manzanilla-López, R. H. (2012). Methodology and symptomatology. In R. H. Manzanilla-López & N. Marban-Mendoza (Eds.), Practical plant nematology (pp. 89–129). Montecillo: Biblioteca Basica de Agricultura.

    Google Scholar 

  • Min, Y. Y., Toyota, K., Goto, K., Sato, E., Mizuguchi, S., Abe, N., Nakano, A., & Sawada, E. (2011). Development of a direct quantitative detection method for Meloidogyne incognita in sandy soils and its application to sweet potato cultivated fields in Tokushima prefecture, Japan. Nematology, 13, 95–102.

    Article  CAS  Google Scholar 

  • Oliveira, C. M. G., Blok, V., Neilson, R., Mróz, T., & Roberts, D. (2017). Hydrolysis probe-based PCR for detection of Pratylenchus crenatus, P. neglectus and P. penetrans. Nematology, 19, 81–91.

    Article  CAS  Google Scholar 

  • Onkendi, E. M., Kariuki, G. M., Marais, M., & Moleleki, L. N. (2014). The threat of root-knot nematodes (Meloidogyne spp.) in Africa: A review. Plant Pathology, 63, 727–737.

    Article  Google Scholar 

  • Raymaekers, M., Smets, R., Maes, B., & Cartuyvels, R. (2009). Checklist for optimization and validation of real-time PCR assays. Journal of Clinical Laboratory Analysis, 23, 145–151.

    Article  CAS  PubMed  Google Scholar 

  • Rusin, L. Y., & Malakhov, V. V. (1998). Free-living marine nematodes possess no eutely. Doklady Biological Sciences, 361, 331–333.

    Google Scholar 

  • Sapkota, R., Skantar, A. M., & Nicolaisen, M. (2016). A TaqMan real-time PCR assay for detection of Meloidogyne hapla in root galls and in soil. Nematology, 18, 147–154.

    Article  CAS  Google Scholar 

  • Schena, L., Nicosia, M. G. L. D., Sanzani, S. M., Faedda, R., Ippolito, A., & Cacciola, S. O. (2013). Development of quantitative PCR detection methods for phytopathogenic fungi and oomycetes. Journal of Plant Pathology, 95, 7–24.

    Google Scholar 

  • Toyota, K., Shirakashi, T., Sato, E., Wada, S., & Min, Y. Y. (2008). Development of a real-time PCR method for the potato-cyst nematode Globodera rostochiensis and the root-knot nematode Meloidogyne incognita. Soil Science & Plant Nutrition, 54, 72–76.

    Article  CAS  Google Scholar 

  • Van Ghelder, C., Reid, A., Kenyon, D., & Esmenjaud, D. (2015). Development of a real time PCR method for the detection of the dagger nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi and X. italiae, and for the quantification of X. index numbers. Plant Pathology, 64, 489–500.

    Article  CAS  Google Scholar 

  • Viaene, N. M., & Abawi, G. S. (1996). Damage threshold of Meloidogyne hapla to lettuce in organic soil. Journal of Nematology, 28, 537–545.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wesemael, W. M. L., & Moens, M. (2008). Quality damage on carrots (Daucus carota L.) caused by the root-knot nematode Meloidogyne chitwoodi. Nematology, 10, 261–270.

    Article  Google Scholar 

  • Wesemael, W. M. L., Viaene, N., & Moens, M. (2011). Root-knot nematodes (Meloidogyne spp.) in Europe. Nematology, 13, 3–16.

    Article  Google Scholar 

  • Yan, G., Smiley, R. W., Okubara, P. A., Skantar, A. M., & Reardon, C. L. (2013). Developing a real-time PCR assay for detection and quantification of Pratylenchus neglectus in soil. Plant Disease, 97, 757–764.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

The authors are grateful for FERA (The Food and Environment Research Agency, United Kingdom) for providing nematode inoculum. E.A. Lopes thanks CNPq (Proc. 304663/2014-0) and The James Hutton Institute for Post-Doctoral Training.

Funding

This study was funded by CNPq (PDE 233650/2014–8) and the Rural and Environment Science and Analytical Services (RESAS) Division of the Scottish Government.

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Correspondence to Everaldo Antônio Lopes.

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Lopes, E.A., Roberts, D.M. & Blok, V.C. Variable ITS-copy number at different developmental stages of Meloidogyne hapla and M. chitwoodi. Eur J Plant Pathol 154, 843–848 (2019). https://doi.org/10.1007/s10658-019-01672-8

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  • DOI: https://doi.org/10.1007/s10658-019-01672-8

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