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Concise case indexing of time series in health care by means of key sequence discovery

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Abstract

Coping with time series cases is becoming an important issue in applications of case based reasoning in medical cares. This paper develops a knowledge discovery approach to discovering significant sequences for depicting symbolic time series cases. The input is a case library containing time series cases consisting of consecutive discrete patterns. The proposed approach is able to find from the given case library all qualified sequences that are non-redundant and indicative. A sequence as such is termed as a key sequence. It is shown that the key sequences discovered are highly valuable in case characterization to capture important properties while ignoring random trivialities. The main idea is to transform an original (lengthy) time series into a more concise representation in terms of the detected occurrences of key sequences. Four alternative ways to develop case indexes based on key sequences are suggested and discussed in detail. These indexes are simply vectors of numbers that are easily usable when matching two time series cases for case retrieval. Preliminary experiment results have revealed that such case indexes utilizing key sequence information result in substantial performance improvement for the underlying case-based reasoning system.

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References

  1. Aamodt A, Plaza E (1994) Case-based reasoning: foundational issues, methodological variations and systems approaches. AI Commun 7:39–59

    Google Scholar 

  2. Agrawal R, Srikant R (1995) Mining sequential patterns. In: Proceedings of the 11th international conference on data engineering, pp 3–14

  3. Baccigalupo C, Plaza E (2006) Case-based sequential ordering of songs for playlist recommendation. In: Roth-Berghofer TR et al. (eds) Proceedings of the European conference on case-based reasoning. Springer, Berlin, pp 286–300

    Chapter  Google Scholar 

  4. Bellazzi R, Larizza C, Riva A (1998) Temporal abstractions for interpreting diabetic patients monitoring data. Intell Data Anal 2:97–122

    Article  Google Scholar 

  5. Bichindaritz I, Conlon E (1996) Temporal knowledge representation and organization for case-based reasoning. In: Proceedings TIME-96. IEEE Computer Society, Washington, pp 152–159

    Google Scholar 

  6. Chan KP, Fu AW (1999) Efficient time series matching by wavelets. In: Proceedings of the international conference on data engineering, pp 126–133

  7. Garofalakis MN, Rajeev R, Shim K (1999) SPIRIT: sequential pattern mining with regular expressing constraints. In: Proceedings of the 25th international conference on very large data bases, pp 223–234

  8. Jaere MD, Aamodt A, Skalle P (2002) Representing temporal knowledge for case-based prediction. In: Craw S, Preece A (eds) Proceedings of the European conference on case-based reasoning, pp 174–188

  9. Jarmulak J, Craw S, Rowe R (2000) Genetic algorithms to optimise CBR retrieval. In: Blanzieri E, Portinale L (eds) Proceedings of the European conference on case-based reasoning. Springer, Berlin, pp 136–147

    Chapter  Google Scholar 

  10. Martin FJ, Plaza E (2004) Ceaseless case-based reasoning. In: Funk P, Gonzales Calero PA (eds) Proceedings of the European conference on case-based reasoning. Springer, Berlin, pp 287–301

    Google Scholar 

  11. McSherry D (2004) Explaining the Pros and Cons of conclusions in CBR. In: Proceedings of the European conference on case-based reasoning, pp 317–330

  12. Montani S et al. (2006) Case-based retrieval to support the treatment of end stage renal failure patients. Artif Intell Med 37:31–42

    Article  Google Scholar 

  13. Montani S, Portinale L (2005) Case based representation and retrieval with time dependent features. In: Proceedings of the international conference on case-based reasoning. Springer, Berlin, pp 353–367

    Chapter  Google Scholar 

  14. Nilsson M, Funk P (2004) A Case-based classification of respiratory sinus arrhythmia. In: Proceedings of the 7th European conference on case-based reasoning, Madrid. Springer, Berlin, pp 673–685

    Google Scholar 

  15. Olsson E, Funk P, Xiong N (2004) Fault diagnosis in industry using sensor readings and case-based reasoning. J Intell Fuzzy Syst 15:41–46

    Google Scholar 

  16. Perner P (2003) Incremental learning of retrieval knowledge in a case-based reasoning system. In: Ashley KD, Bridge DG (eds) Proceedings of the international conference on case-based reasoning. Springer, Berlin, pp 422–436

    Chapter  Google Scholar 

  17. Salton G (1968) Automatic information organization and retrieval. McGraw–Hill, New York

    Google Scholar 

  18. Schmidt R, Heindl B, Pollwein B, Gierl L (1996) Abstraction of data and time for multiparametric time course prognoses. In: Advances of case-based reasoning. Lecture notes in artificial intelligence, vol 1168. Springer, Berlin, pp 377–391

    Chapter  Google Scholar 

  19. von Schéele B (1999) Classification Systems for RSA, ETCO2 and other physiological parameters. PBM Stressmedicine. Technical Report, Heden 110, 82131 Bollnäs, Sweden

  20. Shahar Y (1997) A framework for knowledge-based temporal abstractions. Artif Intell 90:79–133

    Article  MATH  Google Scholar 

  21. Srikant R, Agrawal R (1996) Mining sequential patterns: generalizations and performance improvements. In: Proceedings of the 5th international conference on extending database technology, pp 3–17

  22. Wu Y, Agrawal D, El Abbadi A (2000) A comparison of DFT and DWT based similarity search in time series databases. In: Proceedings of the 9th ACM CIKM conference on information and knowledge management, McLean, VA, pp 488–495

  23. Zelikovitz S, Hirsh H (2002) Integrating background knowledge into nearest-neighbor text classification. In: Craw S, Preece A (eds) Proceedings of the European conference on case-based reasoning. Springer, Berlin, pp 1–5

    Google Scholar 

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Correspondence to Ning Xiong.

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Xiong, N., Funk, P. Concise case indexing of time series in health care by means of key sequence discovery. Appl Intell 28, 247–260 (2008). https://doi.org/10.1007/s10489-007-0059-x

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  • DOI: https://doi.org/10.1007/s10489-007-0059-x

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