Abstract
Recombinant acetate kinase (AcK) was obtained from the aerobic haloalkalitolerant methanotroph Methylomicrobium alcaliphilum 20Z by heterologous expression in Escherichia coli and purification by affinity chromatography. The substrate specificity, the kinetics and oligomeric state of the His6-tagged AcK were determined. The M. alcaliphilum AcK (2 × 45 kDa) catalyzed the reversible phosphorylation of acetate into acetyl phosphate and exhibited a dependence on Mg2+ or Mn2+ ions and strong specificity to ATP/ADP. The enzyme showed the maximal activity and high stability at 70 °C. AcK was 20-fold more active in the reaction of acetate synthesis compared to acetate phosphorylation and had a higher affinity to acetyl phosphate (K m 0.11 mM) than to acetate (K m 5.6 mM). The k cat /K m ratios indicated that the enzyme had a remarkably high catalytic efficiency for acetate and ATP formation (k cat/K m = 1.7 × 106) compared to acetate phosphorylation (k cat/K m = 2.5 × 103). The ack gene of M. alcaliphilum 20Z was shown to be co-transcribed with the xfp gene encoding putative phosphoketolase. The Blast analysis revealed the ack and xfp genes in most genomes of the sequenced aerobic methanotrophs, as well as methylotrophic bacteria not growing on methane. The distribution and metabolic role of the postulated phosphoketolase shunted glycolytic pathway in aerobic C1-utilizing bacteria is discussed.



Similar content being viewed by others
References
Aceti DJ, Ferry JG (1988) Purification and characterization of acetate kinase from acetate grown Methanosarcina thermophila. J Bacteriol 263:15444–15448
Bock A-K, Glasemacher J, Schmidt R, Schönheit P (1999) Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritima. J Bacteriol 181:1861–1867
Bowmann CM, Valdez RO, Nishimura JS (1976) Acetate kinase from Veillonella alcalescens. Regulations of enzyme activity by succinate and substrates. J Biol Chem 251:3117–3121
Chittori S, Savithri HS, Murthy MRN (2012) Structural and mechanistic investigations on Salmonella typhimurium acetate kinase (AckA): identification of a putative ligand binding pocket at the dimeric interface. BMC Struct Biol 12:24
Fei Q, Guarnieri MT, Tao L, Laurens LM, Dowe N, Pienkos PT (2014) Bioconversion of natural gas to liquid fuel: opportunities and challenges. Biotechnol Adv 32:596–614
Gorrell A, Lawrence SH, Ferry JG (2005) Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila. J Biol Chem 280:10731–10742
Hanson RS, Hanson TE (1996) Methanotrophic bacteria. Microbiol Rev 60:439–471
Ingram-Smith C, Gorrell A, Lawrence SH, Iyer P, Smith K, Ferry JG (2005) Characterization of the acetate binding pocket in the Methanosarcina thermophila acetate kinase. J Bacteriol 187:2386–2394
Jiang H, Chen Y, Pa Jiang, Zhanga C, Smith TJ, Murrell JC, Xinga X-H (2010) Methanotrophs: multifunctional bacteria with promising applications in environmental bioengineering. Biochem Eng J 49:277–288
Kalyuzhnaya MG (2015) Methane biocatalysis: selecting the right microbe. Biotechnology for biofuel production and optimization. doi: 10.1016/B978-0-444-63475-7.00013-3
Kalyuzhnaya M, Khmelenina VN, Kotelnikova S, Holmquist L, Pedersen K, Trotsenko YA (1999) Methylomonas scandinavica sp. nov., a new methanotrophic psychrotrophic bacterium isolated from deep igneous rock ground water of Sweden. Syst Appl Microbiol 22:565–572
Kalyuzhnaya MG, Puri AW, Lidstrom ME (2015) Metabolic engineering in methanotrophic bacteria. Metab Eng 29:142–152
Kalyuzhnaya MG, Yang S, Rozova ON, Smalley NE, Clubb J, Lamb A, Gowda GA, Raftery D, Fu Y, Bringel F, Vuilleumier S, Beck D, Trotsenko YA, Khmelenina VN, Lidstrom ME (2013) Highly efficient methane biocatalysis revealed in methanotrophic bacterium. Nat Commun 4:2785. doi:10.1038/ncomms3785
Khmelenina VN, Kalyuzhnaya MG, Sakharovsky VG, Suzina NE, Trotsenko YA, Gottschalk G (1999) Osmoadaptation in halophilic and alkaliphilic methanotrophs. Arch Microbiol 172:321–329
Khmelenina VN, Rozova ON, But YS, Mustakhimov II, Reshetnikov AS, Beschastnyi AP, Trotsenko YA (2015a) Biosynthesis of secondary metabolites in methanotrophs: biochemical and genetic aspects (Review). Appl Biochem Microbiol (Moscow) 51:150–158
Khmelenina VN, Rozova ON, But CY, Mustakhimov II, Reshetnikov AS, Beschastnyi AP, Trotsenko YA (2015b) Prikl Biokhim Mikrobiol 51:140–150
Knorr R, Ehrmann MA, Vogel RF (2001) Cloning, expression, and characterization of acetate kinase from Lactobacillus sanfranciscensis. Microbiol Res 156:267–277
Lontoh S, Semrau JD (1998) Methane and trichloroethylene oxidation by the particulate methane monooxygenase of Methylosinus trichosporium OB3b. Appl Environ Microbiol 64:1106–1114
Lontoh S, Zahn JA, DiSpirito AA, Semrau JD (2000) Identification of intermediates of in vivo trichloroethylene oxidation by the membrane-associated methane monooxygenase. FEMS Microbiol Lett 186:109–113
Murrell JC, Jetten MSM (2009) The microbial methane cycle. Environ Microbiol Rep 1:279–284
Nakijima H, Suzuki K, Imahori K (1978) Purification and properties of acetate kinase from Bacillus stearothermophilus. J Biochem 84:193–203
Ratledge C, Holdsworth JE (1985) Properties of a pentulose-5-phosphate phosphoketolase from yeast grown on xylose. Appl Microbiol Biotechnol 22:217–221
Reshetnikov AS, Khmelenina VN, Trotsenko YA (2006) Characterization of the ectoine biosynthesis genes of haloalkalitolerant obligate methanotroph “Methylomicrobium alcaliphilum 20Z”. Arch Microbiol 184:286–296
Reshetnikov AS, Rozova ON, Khmelenina VN, Mustakhimov II, Beschastny AP, Murrell JC, Trotsenko YA (2008) Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Methylococcus capsulatus Bath. FEMS Microbiol Lett 288:202–210
Rose IA, Grunberg-Manago M, Korey SF, Ochoa S (1954) Enzymatic phosphorylation of acetate. J Biol Chem 211:737–756
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, New York
Sánchez B, Zúniga Manuel F, González-Candelas Reyes-Gavilán CG, Margollez A (2010) Bacterial and eukaryotic phosphoketolases: phylogeny, distribution and evolution. J Mol Microbiol Biotechnol 18:37–51
Schaupp A, Ljungdahl LG (1974) Purification and properties of acetate kinase from Clostridium thermoaceticum. Arch Microbiol 100:121–129
Sharp CE, Smirnova AV, Kalyuzhnaya MG, Bringel F, Hirayama H, Jetten MSM, Reshetnikov AS, Klotz MG, Knief C, Kyrpides N, Op den Camp HJM, Sakai Y, Shapiro N, Trotsenko YA, Vuilleumier S, Woyke T, Dunfield PF (2015) Draft genome sequence of the moderately halophilic methanotroph, Methylohalobius crimeensis strain 10Ki. Genome Announc 3(3):e00644
Semrau J (2011) Bioremediation via methanotrophy: overview of recent findings and suggestions for future research. Front Microbiol. doi:10.3389/fmicb.2011.00209
Slater GG (1969) Stable pattern formation and determination of molecular size by pore-limit electrophoresis. Anal Chem 41:1039–1041
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol doi: 10.1093/molbev/msm092
Thomson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 24:4876–4882
Trotsenko YA, Murrell JC (2008) Metabolic aspects of obligate aerobic methanotrophy. Adv Appl Microbiol 63:183–229
Acknowledgments
This work was supported by the Russian Science Foundation, Project No 14-14-01045.
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Rozova, O.N., Khmelenina, V.N., Gavletdinova, J.Z. et al. Acetate kinase-an enzyme of the postulated phosphoketolase pathway in Methylomicrobium alcaliphilum 20Z. Antonie van Leeuwenhoek 108, 965–974 (2015). https://doi.org/10.1007/s10482-015-0549-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10482-015-0549-5