Skip to main content
Log in

Phylogeny and chromosomal variations in East Asian Carex, Siderostictae group (Cyperaceae), based on DNA sequences and cytological data

  • Regular Paper
  • Published:
Journal of Plant Research Aims and scope Submit manuscript

Abstract

Carex (Cyperaceae) is one of the largest genera of the flowering plants, and comprises more than 2,000 species. In Carex, section Siderostictae with broader leaves distributed in East Asia is thought to be an ancestral group. We aimed to clarify the phylogenetic relationships and chromosomal variations within the section Siderostictae, and to examine the relationship of broad-leaved species of the sections Hemiscaposae and Surculosae from East Asia, inferred from DNA sequences and cytological data. Our results indicate that a monophyletic Siderostictae clade, including the sections Hemiscaposae, Siderostictae and Surculosae, as the earliest diverging group in the tribe Cariceae. Low chromosome numbers, 2n = 12 or 24, with large sizes were observed in these three sections. Our results suggest that the genus Carex might have originated or relictly restricted in the East Asia. Geographical distributions of diploid species are restricted in narrower areas, while those of tetraploid species are wider in East Asia. It is concluded that chromosomal variations in Siderostictae clade may have been caused by polyploidization and that tetraploid species may have been able to exploit their habitats by polyploidization.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Ball PW, Reznicek AA (2002) Carex. In: Flora of North America Editorial Committee (ed) Flora of North America North of Mexico, vol 23: Magnoliophyta, Commelinidae (in part), Cyperaceae. Oxford University Press, New York, pp 254–572

  • Dai LK, Liang SY, Zhang S, Tang Y, Koyama T, Tucker GC (2010) Carex L. In: Wu Z-Y, Raven PH, Hong D (eds) Flora of China, vol 23. Science Press, Beijing and Missouri Botanical Garden Press, St. Louis, pp 285–461

  • Egorova TV (1999) The sedges (Carex L.) of Russia and adjacent states (within the limits of the former USSR). St. Petersburg State Chemical-Pharmaceutical Academy, St. Petersburg and Missouri Botanical Garden, St. Louis

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416

    Article  Google Scholar 

  • Grant VE (1981) Plant speciation, 2nd edn. Columbia University Press, New York

    Google Scholar 

  • Hipp AL, Rothrock PE, Roalson EH (2009) The evolution of chromosome arrangements in Carex (Cyperaceae). Bot Rev 75:96–109

    Article  Google Scholar 

  • Hoshino T (1981) Karyomorphological and cytogenetical studies on aneuploidy in Carex. J Sci Hiroshima Univ, ser. B, Div 2 Bot 17:155–238

    Google Scholar 

  • Hoshino T, Masaki T (2011) Illustrated sedges of Japan. Heibonsha, Tokyo (in Japanese with English description)

    Google Scholar 

  • Hoshino T, Tanaka R (1977) Karyomorphological studies of Carex siderosticta and its two allied species. La Kromosomo II 7–8:191–194

    Google Scholar 

  • Hoshino T, Okamura K, Hong D-Y, Dai L-K, Nakata M, Tanaka R (1993) Cytological studies of chinese Cyperaceae (1). Chromosome counts of nine species collected from Jilin, Liaoning and Hebei provinces. J Jpn Bot 68:65–69

    Google Scholar 

  • Hsiao C, Chatterton NJ, Asay KH, Jensen KB (1994) Phylogenetic relationships of 10 grass species: an assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in Monocots. Genome 37:112–120

    Article  CAS  PubMed  Google Scholar 

  • Koyama T (1962) Classification of the family Cyperaceae (2). J Fac Sci Univ Tokyo, Sect. 3 Bot 8:149–278

    Google Scholar 

  • Kükenthal G (1909) Cyperaceae-Caricoideae. In: Engler A (ed) Das Pflanzenreich IV Heft 38. Wilhelm Engelmann, Leipzig, pp 1–824

    Google Scholar 

  • Levin DA (1983) Polyploidy and novelty in flowering plants. Am Nat 122:1–25

    Article  Google Scholar 

  • Roalson EH (2008) A synopsis of chromosome number variation in the Cyperaceae. Bot Rev 74:209–393

    Article  Google Scholar 

  • Roalson EH, Columbus JT, Friar EA (2001) Phylogenetic relationships in Cariceae (Cyperaceae) based on ITS (nrDNA) and trnT-L-F (cpDNA) region sequences: assessment of sub generic and sectional relationships in Carex with emphasis on section Acrocystis. Syst Bot 26:318–341

    Google Scholar 

  • Sharma AK, Sharma A (1980) Chromosome techniques. Theory and practice, 3rd edn. Butterworths, London, p 55

    Google Scholar 

  • Swofford DL (2002) PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0b 10. Sinauer Associates, Massachusetts

    Google Scholar 

  • Starr JR, Ford BA (2009) Phylogeny and evolution in Cariceae (Cyperaceae): current knowledge and future directions. Bot Rev 75:110–137

    Article  Google Scholar 

  • Starr JR, Bayer RJ, Ford BA (1999) The phylogenetic position of Carex section Phyllostachys and ITS implication for phylogeny and subgeneric circumscription in Carex (Cyperaceae). Am J Bot 86:563–577

    Google Scholar 

  • Starr JR, Harris SA, Simpson DA (2004) Phylogeny of the uni-spicate taxa in Cyperaceae tribe Cariceae I: generic relationships and evolutionary scenarios. Syst Bot 29:528–544

    Article  Google Scholar 

  • Starr JR, Harris SA, Simpson DA (2008) Phylogeny of the uni-spicate taxa in Cyperaceae tribe Cariceae II: the limits of Uncinia. In: Naczi RFC, Ford BA (eds) Sedges: uses, diversity and systematics of the Cyperaceae. Monographs in systematic botany from the Missouri Botanical Garden, Saint Louis, pp 243–267

    Google Scholar 

  • Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105–1109

    Article  CAS  PubMed  Google Scholar 

  • Tanaka N (1939) Chromosome studies in Cyperaceae IV. Chromosome number of Carex species. Cytologia 10:51–58

    Article  Google Scholar 

  • Tanaka N (1940) Chromosome studies in Cyperaceae, VIII. Meiosis in diploid and tetraploid forms of Carex siderosticta hance. Cytologia 11:282–310

    Article  Google Scholar 

  • Tanaka N (1948) The problem of aneuploidy. Biological contribution in Japan. Hokuryukan, Tokyo (in Japanese)

    Google Scholar 

  • Tang Y-C, Xiang G-Y (1989) A cytological study of Carex siderosticta hance (Cyperaceae) and its implication in phytogeography. Cathaya 1:49–60

    Google Scholar 

  • Thompson JD, Lumaret R (1992) The evolutionary dynamics of polyploid plants—origins, establishment and persistence. Trends Ecol Evol 7:302–307

    Article  CAS  PubMed  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Waterway MJ, Starr JR (2007) Phylogenetic relationships in tribe Cariceae (Cyperaceae) based on nested analyses of four molecular data sets. Aliso 23:165–192

    Google Scholar 

  • Waterway MJ, Hoshino T, Masaki T (2009) Phylogeny, species richness, and ecological specialization in Cyperaceae tribe Cariceae. Bot Rev 75:138–159

    Article  Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols, a guide to methods and applications. Academic Press, New York, pp 315–322

    Google Scholar 

  • Yano O, Katsuyama T, Hoshino T (2008) Cytological studies of Japanese Carex (Cyperaceae) I. J Jpn Cyperol 13:9–21 (in Japanese with English abstract)

    Google Scholar 

  • Yano O, Ikeda H, Watson MF, Rajbhandari KR, Jin XF, Hoshino T, Muasya AM, Ohba H (2012) Phylogenetic position of the Himalayan genus Erioscirpus (Cyperaceae) inferred from DNA sequence data. Bot J Linn Soc 170:1–11

    Google Scholar 

  • Yen AC, Olmstead RG (2000) Molecular systematics of Cyperaceae tribe Cariceae based on two chloroplast DNA regions: ndhF and trnL intron-intergenic spacer. Syst Bot 25:479–494

    Article  Google Scholar 

Download references

Acknowledgments

The authors thank Ms. Satoe Yoshioka and Mr. Yoshitaka Yukie for their great help in this study. This study was partly supported by a Grant-in-Aid for Scientific Research (A) no. 23255005 (to H. I.), (C) no. 21570103 (to T. H.), and a Grant-in-Aid for Young Scientists (B) no. 25840136 (to O. Y.), from the Japan Society for the Promotion of Science.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Okihito Yano.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yano, O., Ikeda, H., Jin, XF. et al. Phylogeny and chromosomal variations in East Asian Carex, Siderostictae group (Cyperaceae), based on DNA sequences and cytological data. J Plant Res 127, 99–107 (2014). https://doi.org/10.1007/s10265-013-0578-y

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10265-013-0578-y

Keywords

Navigation