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Occurrence and characterization of PEND proteins in angiosperms

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Abstract

The PEND protein is a DNA-binding protein in the inner envelope membrane of the developing chloroplast. It consists of a short pre-sequence, an N-terminal DNA-binding domain (cbZIP), a central repeat domain, and a C-terminal transmembrane domain. PEND homologs have been detected in various angiosperms, including Arabidopsis thaliana, Brassica napus, Medicago truncatula, cucumber and cherry. Monocot homologs have also been detected in barley and rice, but sequence conservation was low in monocots. PEND-related sequences have not been detected in non-flowering plants and algae. Green fluorescent protein fusions consisting of the N-terminal as well as full-length PEND homologs in A. thaliana and B. napus were targeted to chloroplasts, and localized to nucleoids and chloroplast periphery, respectively. Immunoblot analysis suggested that crucifer homologs were present in chloroplasts probably as a dimer, as in the case of pea. These results suggest that PEND protein is present in angiosperms, and the homologs in crucifers are functionally analogous to the PEND protein in pea.

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References

  • Chiu W, Niwa Y, Zeng W, Hirano T, Kobayashi H, Sheen J (1996) Engineered GFP as a vital reporter in plants. Curr Biol 6:325–330

    Google Scholar 

  • Felsenstein J (1988) Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet 22:521–565

    Google Scholar 

  • Hashimoto K, Sato N (2001) Characterization of the mitochondrial nad7 gene in Physcomitrella patens: Similarity with angiosperm nad7 genes. Plant Sci 160:807–815

    Google Scholar 

  • Henrik N, Søren B, Gunnar H (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300:1005–1016

    Google Scholar 

  • Jenczewski E, Eber F, Grimaud A, Huet S, Lucas MO, Monod H, Chevre AM (2003) PrBn, a major gene controlling homeologous pairing in oilseed rape (Brassica napus) haploids. Genetics 164:645–653

    Google Scholar 

  • Kabeya Y, Hashimoto K, Sato N (2002) Identification and characterization of two phage-type RNA polymerase cDNAs in the moss Physcomitrella patens: implication of recent evolution of nuclear-encoded RNA polymerase of plastids in plants. Plant Cell Physiol 43:245–55

    Google Scholar 

  • Lukens L, Zou F, Lydiate D, Parkin I, Osborn T (2003) Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164:359–372

    Google Scholar 

  • Matsuzaki M, Misumi O, Shin-I T, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Nishida K, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T (2004) Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428:653–657

    Google Scholar 

  • Peltier JB, Ytterberg AJ, Sun Q, Van Wijk KJ (2004) New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast and versatile fractionation strategy. J Biol Chem 279:49367–49383

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    Google Scholar 

  • Sato N (2000) SISEQ: manipulation of multiple sequence and large database file for common platforms. Bioinformatics 16:180–181

    Google Scholar 

  • Sato N, Ohta N (2001) DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane. Nucleic Acids Res 29:2244–2250

    Google Scholar 

  • Sato N, Albrieux C, Joyard J, Douce R, Kuroiwa T (1993) Detection and characterization of a plastid envelope DNA binding protein which may anchor plastids nucleoids. EMBO J 12:555–561

    Google Scholar 

  • Sato N, Misumi O, Shinada Y, Sasaki M, Yoine M (1997) Dynamics of localization and protein composition of plastid nucleoid in light-grown pea seedlings. Protoplasma 200:163–173

    Google Scholar 

  • Sato N, Ohshima K, Watanabe A, Ohta N, Nishiyama Y, Joyard J, Douce R (1998) Molecular characterization of the PEND protein, a novel bZIP protein present in the envelope membrane that is the site of nucleoid replication in developing plastids. Plant Cell 10:859–872

    Google Scholar 

  • Sato N, Rolland N, Block MA, Joyard J (1999) Do plastid envelope membranes play a role in the expression of the plastid genome? Biochimie 81:619–629

    Google Scholar 

  • Sato N, Terasawa K, Miyajima K, Kabeya Y (2003) Organization, developmental dynamics, and evolution of plastid nucleoids. Int Rev Cytol 232:217–262

    Google Scholar 

  • Soltis DE, Soltis PS, Chase MW, Mort ME, Albach DC, Zanis M, Savolainen V, Hahn WH, Hoot SB, Fay MF, Axtell M, Swensen SM, Prince LM, Kress WJ, Nixon KC, Farris JS (2000) Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Bot J Linn Soc 133:381–461

    Google Scholar 

  • Terasawa K, Sato N (2005) Visualization of plastid nucleoids in situ using the PEND-GFP fusion protein. Plant Cell Physiol (published online 3 March 2005 DOI: 10.1093/pcp/pci070)

    Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Google Scholar 

  • Waldmüller S, Müller U, Link G (1996) GSBF1, a seedling-specific bZIP DNA-binding protein with preference for a ‘split’ G-box-related element in Brassica napusRbcS promoters. Plant Mol Biol 32:631–639

    Google Scholar 

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Acknowledgements

The authors thank Mr. T. Nomata, a former student in our laboratory, for providing them with moss protonemal cells. We are also grateful to Mr. Y. Ohki, another former student in our laboratory, who performed the targeting experiments in Fig. 2a. This work was supported in part by Grants-in-Aid for Scientific Research (No. 15370017) from the JSPS.

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Correspondence to Naoki Sato.

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Terasawa, K., Sato, N. Occurrence and characterization of PEND proteins in angiosperms. J Plant Res 118, 111–119 (2005). https://doi.org/10.1007/s10265-005-0200-z

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