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FISH Mapping and Identification of Zhikong Scallop (Chlamys farreri) Chromosomes

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Abstract

Chromosome identification is the first step in genomic research of a species, but it remains a challenge in scallops. In the present study, fluorescence in situ hybridization (FISH) mapping of 19 fosmid clones was attempted and used for chromosome identification in Zhikong scallop (Chlamys farreri Jones et Preston, 1904). Data showed that 10 clones were successfully mapped, including 7 without and 3 with C 0 t-1 DNA. Among them, 2 represented multiple signals and made no contribution to chromosome identification. Karyotypic analysis and cohybridization indicated that the remaining 8 clones realized the identification of 8 chromosomes. All 10 clones were sequenced at both ends, which could be developed as sequence-tagged sites and used for the unification of the cytological and genetic linkage maps. This study shows that fosmid clones can benefit chromosome identification and will undoubtedly be useful for cytogenetic research in Zhikong scallop.

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References

  • Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27, 573–580

    Article  PubMed  CAS  Google Scholar 

  • Eirín-López JM, González-Tizón AM, Martínez A, Méndez J (2002) Molecular and evolutionary analysis of mussel histone genes (Mytilus spp): possible evidence of an “orphon origin” for H1 histone genes. J Mol Evol 55, 272–283

    Article  PubMed  Google Scholar 

  • Eirín-López JM, Fernanda Ruiz M, González-Tizón AM, Martínez A, Sánchez L, Méndez J (2004) Molecular evolutionary characterization of the mussel Mytilus histone multigene family: first record of a tandemly repeated unit of five histone genes containing an H1 subtype with “orphon” features. J Mol Evol 58, 131–144

    Article  PubMed  Google Scholar 

  • Gajardo G, Parraguez M, Colihueque N (2002) Karyotype analysis and chromosome banding of the Chilean-Peruvian scallop Argopecten purpuratus (Lamarck, 1819). J Shellfish Res 21, 585–590

    Google Scholar 

  • Gonzáles-Tizón A, Martínez-Lage A, Mariñas L, Feire R, Cornudella L, Méndez Y (1998) Cytogenetic characterization of Donax trunculus (Mollusca, Bivalvia) 13th International Chromosome Conference [abstract]. Cytogenet Cell Genet 81, 109

    Google Scholar 

  • Guo X, Allen SK (1997) Fluorescence in situ hybridization of the vertebrate telomere sequence to chromosome ends of the Pacific oyster, Crassostrea gigas Thunberg. J Shellfish Res 16, 87–89

    Google Scholar 

  • Huang X, Bao Z, Bi K, Hu J, Zhang C, Zhang Q, Hu X (2006) Chromosomal localization of the major ribosomal RNA genes in scallop Chlamys farreri. Acta Oceanol Sin 25, 108–115

    CAS  Google Scholar 

  • Insua A, López-Piñón MJ, Méndez J (1998) Characterization of Aequipecten opercularis (Bivalvia: Pectinidae) chromosomes by different staining techniques and fluorescent in situ hybridization. Genes Genet Syst 73, 193–200

    Article  PubMed  CAS  Google Scholar 

  • Kim JS, Klein PE, Klein RR, Price HJ, Mullet JE, Stelly DM (2005) Chromosome identification and nomenclature of sorghum bicolor. Genetics 169, 1169–1173

    Article  PubMed  CAS  Google Scholar 

  • Li L, Xiang J, Liu X, Zhang Y, Dong B, Zhang X (2005) Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers. Aquaculture 245, 63–73

    Article  CAS  Google Scholar 

  • Li C, Song L, Zhao J, Zou H, Su J, Zhang H (2006) Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B. DNA Seq 17, 440–451

    Article  PubMed  CAS  Google Scholar 

  • Nagashima K, Sato M, Kawamata K, Nakamura A, Ohta T (2005) Genetic structure of Japanese scallop population in Hokkaido, analyzed by mitochondrial haplotype distribution. Mar Biotechnol 7, 1–10

    Article  PubMed  CAS  Google Scholar 

  • Qin Y, Liu X, Zhang H, Zhang G, Guo X (2007) Identification and mapping of amplified fragment length polymorphism markers linked to shell color in Bay scallop, Argopecten irradians irradians (Lamarck, 1819). Mar Biotechnol 9, 66–73

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory)

    Google Scholar 

  • Sato M, Kawamata K, Zaslavskaya N, Nakamura A, Ohta T, Nishikiori T, Brykov V, Nagashima K (2005) Development of microsatellite markers for Japanese scallop (Mizuhopecten yessoensis) and their application to a population genetic study. Mar Biotechnol 7, 713–728

    Article  PubMed  CAS  Google Scholar 

  • Song L, Xu W, Li C, Li H, Wu L, Xiang J, Guo X (2006) Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians. Mar Biotechnol 8, 161–169

    Article  PubMed  CAS  Google Scholar 

  • Wang Y, Guo X (2004) Chromosomal rearrangement in Pectinidae revealed by rRNA loci and implications for bivalve evolution. Biol Bull 207, 247–256

    Article  PubMed  CAS  Google Scholar 

  • Wang Y, Xu Z, Guo X (2001) A centromeric satellite sequence in the Pacific oyster (Crassostrea gigas Thunberg) identified by fluorescence in situ hybridization. Mar Biotechnol 3, 486–492

    Article  PubMed  CAS  Google Scholar 

  • Wang S, Bao Z, Pan J, Zhang L, Yao B, Zhan A, Bi K, Zhang Q (2004) AFLP linkage map of an intraspecific cross in Chlamys farreri. J Shellfish Res 23, 491–499

    Google Scholar 

  • Wang L, Song L, Chang Y, Xu W, Ni D, Guo X (2005a) A preliminary genetic map of Zhikong scallop (Chlamys farreri Jones et Preston 1904). Aquac Res 36, 643–653

    Article  CAS  Google Scholar 

  • Wang Y, Xu Z, Pierce JC, Guo X (2005b) Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Mar Biotechnol 7, 207–214

    Article  PubMed  CAS  Google Scholar 

  • Wang S, Bao Z, Li N, Zhang L, Hu J (2007) Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution. Mar Biotechnol 9, 231–242

    Article  PubMed  CAS  Google Scholar 

  • Xu Z, Guo X, Gaffney PM, Pierce JC (2001) Chromosomal location of the major ribosomal RNA genes in Crassostrea virginica and Crassostrea gigas. Veliger 44, 86–90

    Google Scholar 

  • Yoshido A, Bando H, Yasukochi Y, Sahara K (2005) The Bombyx mori karyotype and the assignment of linkage groups. Genetics 170, 675–685

    Article  PubMed  CAS  Google Scholar 

  • Zhang QY, Yu G, Cooper RK, Tiersch TR (1999) Chromosomal location by fluorescence in situ hybridization of the 28S ribosomal RNA gene of the eastern oyster. J Shellfish Res 18, 431–435

    Google Scholar 

  • Zhang L, Bao Z, Cheng J, Li H, Huang X, Wang S, Zhang C, Hu, J (2007a) Fosmid library construction and initial analysis of end sequences in Zhikong scallop (Chlamys farreri). Mar Biotechnol [DOI 101007/s10126-007-9014-4]

  • Zhang L, Bao Z, Wang S, Huang X, Hu J (2007b) Chromosome rearrangements in Pectinidae (Bivalvia: Pteriomorphia) implied based on chromosomal localization of histone H3 gene in four scallops. Genetica 130, 193–198

    Article  PubMed  CAS  Google Scholar 

  • Zhang L, Chen C, Cheng J, Wang S, Hu X, Hu J, Bao, Z (2007c) Initial analysis of tandemly repetitive sequences in the genome of Zhikong scallop (Chlamys farreri Jones et Preston) DNA Seq [DOI 101080/10425170701462316]

  • Zwick MS, Hanson RE, McKnight TD, Islam-Faridi MN, Stelly DM, Wing RA, Price HJ (1997) A rapid procedure for the isolation of C 0 t-1 DNA from plants. Genome 40, 138–142

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by The National High Technology Research and Development Program of China (2006AA10A408; 2006AA10A402), Specialized Research Fund for the Doctoral Program of Higher Education (20060423015), and NCET-06-0594.

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Correspondence to Jingjie Hu.

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Zhang, L., Bao, Z., Wang, S. et al. FISH Mapping and Identification of Zhikong Scallop (Chlamys farreri) Chromosomes. Mar Biotechnol 10, 151–157 (2008). https://doi.org/10.1007/s10126-007-9045-x

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  • DOI: https://doi.org/10.1007/s10126-007-9045-x

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