Skip to main content
Log in

Identification and molecular characterization of tea-oil camellia-associated totivirus 1

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

A Correction to this article was published on 01 June 2021

This article has been updated

Abstract

A novel dsRNA virus was identified by high-throughput sequencing from tea oil trees in China. Its complete genome of 4714 bp contains two open reading frames (ORFs). ORF1 encodes a putative coat protein (CP) of 702 amino acids (aa), and ORF2 codes for an RNA-dependent RNA polymerase (RdRp) of 855 aa. The virus shares the highest aa sequence identity of 45.21% in RdRp with taro-associated totivirus L (MN_119621), a member of the genus Totivirus in the family Totiviridae. Phylogenetic analysis of the aa sequences of the RdRp places the new virus in a group with other totiviruses, suggesting that this virus, which is provisionally named "tea-oil camellia-associated totivirus 1", should be considered a member of the genus Totivirus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

Change history

References

  1. Liu J, Wu LC, Chen D, Yu ZG, Wei CJ (2018) Development of a soil quality index for Camellia oleifera forestland yield under three different parent materials in Southern China. Soil Till Res 176:45–50

    Article  Google Scholar 

  2. Zhu F, Zeng TW, Peng WW, Deng XY (2018) The main diseases and insect pests of Camellia oleifer in northern Jiangxi and control measures. Mod Agric Sci Technol 02:129–131

    Google Scholar 

  3. Wu LP, Du YM, Xiao H, Peng L, Li R (2020) Complete genomic sequence of tea-oil camellia deltapartitivirus 1, a novel virus from Camellia oleifera. Adv Virol 165(1):227–231

    CAS  Google Scholar 

  4. Knowles NJ, Hovi T, Hyypia T, King AMQ, Lindberg AM, Pallansch MA, Zell R (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, pp 855–880

    Google Scholar 

  5. Said A, Nobuhiro S (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384

    Article  Google Scholar 

  6. Chen S, Cao LG, Huang QQ, Qian YJ, Zhou XP (2016) The complete genome sequence of a novel maize-associated totivirus. Arch virol 161:487–490

    Article  CAS  Google Scholar 

  7. Fujimura T, Esteban R (2013) Cap snatching in yeast L-BC double-stranded RNA totivirus. J Biol Chem 288:23716–23724

    Article  CAS  Google Scholar 

  8. Huang Y, Guo XF, Zhang SY, Zhao QM, Sun Q, Zhou HN, Zhang JS, Tong YG (2018) Discovery of two novel totiviruses from Culex tritaeniorhynchus classifiable in a distinct clade with arthropod-infecting viruses within the family Totiviridae. Adv Virol 163:2899–2902

    CAS  Google Scholar 

  9. Øyvind H, Aase BM, Pål N, Karine L, Beate JT, Trygve ME, Norbert R, Marit R, Øystein E (2011) Cardiomyopathy syndrome of atlantic salmon (Salmo salar L.) is caused by a double-stranded RNA virus of the Totiviridae family. J Virol 85:5275–5286

    Article  Google Scholar 

  10. Liu HQ, Fu YP, Xie JT, Cheng JS, Li GQ, Yi XH, Jiang DH (2012) Discovery of novel dsRNA viral sequences by in silico cloning and implications for viral diversity. Host Range Evol PLoS One 7:e42147

    Article  CAS  Google Scholar 

  11. Li R, Mock R, Huang Q, Abad J, Hartung J, Kinard G (2008) A reliable and inexpensive method of nucleic acid extraction for the PCR-based detection of diverse plant pathogens. J Virol Methods 154:48–55

    Article  CAS  Google Scholar 

  12. Siever SF, Wilm A, Dineen D, Gibson TJ, Karplus K, Li WZ, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7:539

    Article  Google Scholar 

  13. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874

    Article  CAS  Google Scholar 

  14. Wickner RB, Ghabrial SA, Nibert ML, Patterson JL, Wang CC (2011) Totivirus. In: Virus taxonomy, the online (9 th) report of the International Committee on Taxonomy of Viruses. https://talk.ictvonline.org/ictv-reports/ictv_9th_report/dsrna-viruses-2011/w/dsrna_viruses/191/totiviridae

  15. Huang CH, Lu CL, Chiu HT (2005) A heuristic approach for detecting RNA H-type pseudoknots. Bioinformatics 21:3501–3508

    Article  CAS  Google Scholar 

  16. Yanga B, Kyungsook H (2009) PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots. Bioinformatics 25(11):1435–1437

    Article  Google Scholar 

  17. de Lima JGS, Teixerira DG, Frietas TT, Lima JPMS, Lanza DCF (2019) Evolutionary origin of 2A-like sequences in Totiviridae genomes. Virus Res 259:1–9

    Article  Google Scholar 

  18. Zhai Y, Attoui H, Mohd Jaafar F, Wang HQ, Cao YX, Fan SP, Sun YX, Liu LD, Mertens PPC, Meng WS, Wang D, Liang GD (2010) Isolation and full-length sequence analysis of Armigeres subalbatus totivirus, the first totivirus isolate from mosquitoes representing a proposed novel genus (Artivirus) of the family Totiviridae. J Gen Virol 91:2836–2845

    Article  CAS  Google Scholar 

  19. Robert AA, Rodrigo FE, Carlos AM, Diego FQ (2017) Complete genome sequence of a variant of maize-associated totivirus from Ecuador. Adv Virol 162:1083–1087

    Google Scholar 

Download references

Acknowledgements

This work was supported by the National Natural Science Foundation of China (Grant no. 31860525).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to L.-P. Wu.

Ethics declarations

Conflict of interest

All authors declare that they have no conflict of interest.

Ethical approval

This article does not contain any research involving human or animal participants.

Additional information

Handling Editor: Stephen John Wylie.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

The original online version of this article was revised: Accession number corrected and figure 2 replace with correct version.

Supplementary Information

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhang, ZY., Huang, H., Han, X.X. et al. Identification and molecular characterization of tea-oil camellia-associated totivirus 1. Arch Virol 166, 2347–2351 (2021). https://doi.org/10.1007/s00705-021-05058-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-021-05058-2

Navigation