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Computing using signals: from cells to P systems

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Abstract

In cell biology a fundamental topic is the study of how biological signals are managed by cells. Signals can arise from inside the cell or from the external environment and the correct answer to certain signals is essential for bacteria to survive in a certain environment. Starting from these biological motivations we consider a model of P systems where the computation is controlled by signals which move across the regions. In particular, we consider signals-based P systems where the symbol-objects cannot be moved and the evolution rules can be activated/inactivated using a finite number of signals (signal-promoters) moved across the membranes; differently from standard P systems using promoters, in our case signal-promoters cannot be created during the computation. After discussing the biological motivations we show how this model becomes universal when it uses one catalyst and a bounded number of signal-promoters. Also results concerning signals-based P systems using non cooperative rules together with several open problems are presented.

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References

  • Ardelean II (2003) Molecular biology of bacteria and its relevance for P systems. 11: 1–19

  • Bottoni P, Martin-Vide C, Păun Gh, Rozenberg G (2002) Membrane systems with promoters/inhibitors. Acta Informatica 38(10): 695–720

  • Cavaliere M (2003) Evolution-communication P systems. 11: 134–145

  • Ceterchi R, Sburlan D (2004) Simulating boolean circuits with P systems. 9: 104–122

  • Ciobanu G, Desai R, Kumar A (2003) Membrane systems and distributed computing. 11: 187–202

  • Ionescu M, Martin-Vide C, Păun Gh. (2002) P systems with symport/antiport of rules: the traces of objects. Grammars 5(2): 65–79

  • Ionescu M, Sburlan D On P systems with promoters/inhibitors. J of Universal Comput Sci (in press)

  • Krishna SN, Păun A (2003) Three universality results on P systems. In: Cavaliere M, Martin-Vide C, Păun Gh, Eds (2003) Brainstorming Week on Membrane Computing, Tarragona, February 2003, TR 26/03 Rovira i Virgili University, Tarragona, 198–206

  • Martin-Vide C, Mauri G, Păun Gh, Rozenberg G, Salomaa A (eds) (2004) Membrane Computing, International Workshop WMC 2003, Tarragona, Spain, July 2003, Revised Papers. Lecture Notes in Computer Science 2933, Springer, Berlin

  • Păun Gh (2002) Membrane computing. An introduction. Springer, Berlin Heidelberg

  • Păun Gh, Rozenberg G, Salomaa A, Zandron C (eds) (2003) Membrane Computing, International Workshop WMC 2002, Curtea de Arges, Romania, August 2002, Revised Papers. Lecture Notes in Computer Science 2597, Springer, Berlin

  • Pelmont J (1995) Catalyseurs du monde vivant. Press Universitaires de Grenoble, Grenoble

  • Ray LB, Adler EM, Gough NR, Chong LD (2004) Focus issue: Computational approaches in signal transduction. Science’s STKE eg3, http://www.stke.org

  • Rozenberg G, Salomaa A (eds) (1997) Handbook of Formal Languages. Springer, Berlin

  • Wang L, Sun YP, Chen WL, Li JH, Zhang CC (2002) Genomic analysis of protein kinase, protein phosphataes and two-component regulatory systems of the cyanobacterium Anabaena. FEMS Microbiological Letters 213: 155–165

    Google Scholar 

  • White D (2000) The physiology and biochemistry of prokaryotes. Oxford University Press, 2nd edition

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Correspondence to Ioan I. Ardelean.

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Ardelean, I., Cavaliere, M. & Sburlan, D. Computing using signals: from cells to P systems. Soft Comput 9, 631–639 (2005). https://doi.org/10.1007/s00500-004-0392-5

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  • DOI: https://doi.org/10.1007/s00500-004-0392-5

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