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A detailed physical map of the porcine major histocompatibility complex (MHC) class III region: Comparison with human and mouse MHC class III regions

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Abstract

A detailed physical map of the porcine MHC class III region on Chr 7 was constructed with a panel of probes in a series of hybridizations on genomic pulsed field gel electrophoresis (PFGE) Southern blots. A precise organization of the 700-kb segment of DNA between G18 and BAT1 can now be proposed, with more than 30 genes mapped to it. Comparison of this region with homologous regions in human and mouse showed only minor differences. The biggest difference was observed in the CYP21/C4 locus with only one CYP21 gene and one C4 gene found, whereas in human and mouse these genes are duplicated. These results show the class III region is very well conserved between pig, human, and mouse, in contrast with the class I and class II regions, which seem more prone to rearrangements.

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References

  • Aguado, B., Campbell, R.D. (1995). The novel gene G17, located in the Human Major Histocompatibility Complex, encodes PBX2, a homeodo-main-containing protein. Genomics 25, 650–659.

    Article  PubMed  CAS  Google Scholar 

  • Bahram, S., Bresnahan, M., Geraghty, D.E., Spies, T. (1994). A second lineage of mammalian histocompatibility complex class I genes. Proc. Natl. Acad. Sci. USA 91, 6259–6263.

    Article  PubMed  CAS  Google Scholar 

  • Brown, W.R.A., Bird, A.P. (1986). Long-range restriction mapping of mammalian genomic DNA. Nature 322, 477–481.

    Article  PubMed  CAS  Google Scholar 

  • Brughelle-Majeur, C., Geffrotin, C., Vaiman, M. (1992). Sequences of the swine 21-hydroxylase gene (CYP21) and a portion of the opposite strand overlapping gene of unknown function previously described in human. Biochim. Biophys. Acta 1171, 153–161.

    Google Scholar 

  • Cameron, P.U., Tabarias, H.A., Pulendran, B., Robinson, W., Dawkins, R.L. (1990). Conservation of the central MHC genome: PFGE mapping and RFLP analysis of complement, HSP70, and TNF genes in the goat. Immunogenetics 31, 253–264.

    Article  PubMed  CAS  Google Scholar 

  • Carroll, M.C., Alper, C.A. (1987). Polymorphism and molecular genetics of human C4. Brit. Med. Bull. 43:50–57.

    PubMed  CAS  Google Scholar 

  • Chaplin, D.D., Woods, D.E., Markham, A.F., Colten, H.R. (1986). Molecular map of the murine S region. Proc. Natl. Acad. Sci. USA 80, 6947–6951.

    Article  Google Scholar 

  • Cheng, J., Macon, K., Volanakis, J.E. (1993). cDNA cloning and characterization of the protein encoded by RD, a gene located in the class III region of the human major histocompatibility complex. Biochem. J. 294, 589–593.

    PubMed  CAS  Google Scholar 

  • Edfors-Lilja, I., Ellengren, H., Winterø, A.K., Ruohonen-Lehto, M, Fredholm, M., Gustafsson, U., Juneja, R.K., Anderson, L. (1993). A large linkage group on pig chromosome 7 including the MHC class I, class II (DQB), and class III (TNFB) genes. Immunogenetics 38, 363–366.

    Article  PubMed  CAS  Google Scholar 

  • Geffrotin, C., Chardon, P., De Andrès-Cara, D.F., Feil, R., Renard, C., Vaiman, M. (1990). The swine steroid 21-hydroxylase gene (CYP21): cloning and mapping within the swine leucocyte antigen complex. Anim. Genet. 21, 1–13.

    PubMed  CAS  Google Scholar 

  • Hsieh, S.L., Campbell, R.D. (1991). Evidence that gene G7a in the human major histocompatibility complex encodes valyl-tRNA synthetase. Biochem. J. 278, 809–816.

    PubMed  CAS  Google Scholar 

  • Kawagushi, H., Oh’Uigin, C, Klein, J. (1991). Evolution of primate C4 and CYP21 genes. In Molecular Evolution of the Major Histocompatibility Complex, J. Klein, D. Klein, eds. (Berlin, Heidelberg, New York: Springer) pp. 357–381.

    Google Scholar 

  • Kendall, E., Sargent, C.A., Campbell, R.D. (1990). Human major histocompatibility complex contains a new cluster of genes between the HLA-D and complement C4 loci. Nucleic Acids Res. 18, 7251–7257.

    Article  PubMed  CAS  Google Scholar 

  • Khanna, A., Campbell, R.D. (1993). Characterization of a novel gene G13 in the class III region of the human MHC. In HLA 1991, K. Tsuji, M. Aizawa, T. Sasazuki, eds. (Oxford: Oxford Univ. Press) Vol. 2, pp. 198–201.

    Google Scholar 

  • Kirszenbaum, M., Renard, C, Geffrotin, C, Chardon, P., Vaiman, M. (1985). Evidence for mapping pig C4 gene(s) within the pig major histocompatibility complex (SLA). Anim. Blood Group Biochem. Genet. 16, 65–68.

    CAS  Google Scholar 

  • Lafuse, W.P., Lanning, D., Spies, T., David, C.S. (1992). PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics 36, 110–116.

    Article  PubMed  CAS  Google Scholar 

  • Lie, W.R., Rothschild, M.F., Warner, C.M. (1987). Mapping of C2, Bf and C4 genes to the swine major histocompatibility complex (swine leukocyte antigen). J. Immunol. 139, 3388–3395.

    PubMed  CAS  Google Scholar 

  • Lunney, I.K. (1994). Current status of the swine leukocyte antigen complex. Vet. Immunol. Immunopathol. 43, 19–28.

    Article  PubMed  CAS  Google Scholar 

  • Milner, C.M., Campbell, R.D. (1992). Genes, genes and more genes in the human major histocompatibility complex. BioEssays 14, 565–571.

    Article  PubMed  CAS  Google Scholar 

  • Milner, C.M., Campbell, R.D. (1993). The G9a gene in the human major histocompatibility complex encodes a novel protein containing ankyrinlike repeats. Biochem. J. 290, 811–818.

    PubMed  CAS  Google Scholar 

  • Nunes, M., Peelman, L., Vaiman, M., Bourgeaux, N., Chardon, P. (1994). Characterization of six new loci within the swine major histocompatibility complex class III region. Mamm. Genome 5, 616–622.

    Article  PubMed  CAS  Google Scholar 

  • Olavesen, M.G., Thomsom, W., Cheng, J., Campbell, R.D. (1993a). Characterization of a novel gene G1 in the human MHC class III region. In HLA 1991, K. Tsuji, M. Aizawa, T. Sasazuki, eds. (Oxford: Oxford Univ. Press) Vol. 2, pp. 190–193.

    Google Scholar 

  • Olavesen, M.G., Snoek, M., Campbell, R.D. (1993b). Localization of a new gene adjacent to the HSP70 genes in human and mouse MHCs. Immunogenetics 37, 394–396.

    Article  CAS  Google Scholar 

  • Pastanen, J., Campbell, R.D. (1993). Characterization of the G8 gene, a novel MHC class III gene. In HLA 1991, K. Tsuji, M. Aizawa, T. Sasazuki, eds. (Oxford: Oxford Univ. Press) Vol. 2, pp. 196–198.

    Google Scholar 

  • Peelman, L.J., Van de Weghe, A.R., Coppieters, W.R., Van Zeveren, A.J., Bouquet, Y.H. (1991). Cloning and sequencing of the porcine complement factor B. Immunogenetics 34, 192–195.

    Article  PubMed  CAS  Google Scholar 

  • Peelman, L.J., Van de Weghe, A.R., Coppieters, W.R., Van Zeveren, A.J., Bouquet, Y.H. (1992). Complete nucleotide sequence of a porcine HSP70 gene. Immunogenetics 35, 286–289.

    Article  PubMed  CAS  Google Scholar 

  • Peelman, L.J., Chardon, P., Nunes, M., Renard, C., Geffrotin, C., Vaiman, M., Van Zeveren, A., Coppieters, W., Van de Weghe, A., Bouquet, Y., Choy, W.W., Strominger, J.L., Spies, T. (1995a). The BAT1 gene in the MHC encodes an evolutionarily conserved putative nuclear RNA helicase of the DEAD family. Genomics 26, 210–218.

    Article  CAS  Google Scholar 

  • Peelman, L.J., Mattheeuws, M., Van Zeveren, A., Van de Weghe, A., Bouquet, Y. (1995b). Conservation of the RD-BF-C2 organization in the pig MHC class III region: mapping and cloning of the pig RD gene. Anim. Genet, in press.

  • Sargent, C.A., Dunham, I., Campbell, R.D. (1989). Identification of multiple HTF-island associated genes in the human major histocompatibility complex class III region. EMBO J. 8, 2305–2312.

    PubMed  CAS  Google Scholar 

  • Sargent, CA., Anderson, M.J., Hsieh, S.-H., Kendall, E., Gomez-Escobar, N., Campbell, R.D. (1994). Characterization of the novel gene G11 lying adjacent to the complement C4A gene in the human major histocompatibility complex. Hum. Mol. Genet. 3, 481–488.

    Article  PubMed  CAS  Google Scholar 

  • Snoek, M., Jansen, M., Olavesen, M., Campbell, R.D., Teuscher, C., Van Vugt, H. (1993). Three Hsp70 genes are located in the C4-H-2D region: possible candidates for the Orch-1 locus. Genomics 15, 350–356.

    Article  PubMed  CAS  Google Scholar 

  • Spies, T., Bresnahan, M., Strominger, J.L. (1989). Human major histocompatibility complex contains a minimum of 19 genes between the complement cluster and HLA-B. Proc. Natl. Acad. Sci. USA 86, 8955–8958.

    Article  PubMed  CAS  Google Scholar 

  • Sugaya, K., Fukagawa, T., Matsumoto, K., Mita, K., Takahashi, E., Ando, A., Inoko, H., Ikemura, T. (1994). Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a notch homolog, human counterpart of mouse mammary tumor gene int-3. Genomics 23, 408–419.

    Article  PubMed  CAS  Google Scholar 

  • Teuscher, C., Gasser, D.L., Woodward, S.R., Hickey, W.F. (1990). Experimental allergic orchitis in mice. VI. Recombinations within the H-2S/H-2D interval define the map position of the H-2 associated locus controlling disease susceptibility. Immunogenetics 32, 337–344.

    PubMed  CAS  Google Scholar 

  • Whitehead, A.S., Goldberger, G., Woods, D.E., Markham, A.F., Colten, M.R. (1983). Use of a cDNA clone for the fourth component of human complement (C4) for analysis of genetic deficiency of C4 in guinea pig. Proc. Natl. Acad. Sci. USA 80, 5387–5391.

    Article  PubMed  CAS  Google Scholar 

  • Woods, D.E., Markham, A.F., Ricker, A.T., Goldberger, G., Colten, H.R. (1982). Isolation of cDNA clones for the human complement protein factor B, a class III major histocompatibility complex gene product. Proc. Natl. Acad. Sci. USA 79, 5661–5665.

    Article  PubMed  CAS  Google Scholar 

  • Wroblewski, J.M., Kaminsky, S.G., Nakamura, I. (1994). Bat-1 genes and the origin of multiple class I loci in the H-2D region. Immunogenetics 39, 276–280.

    Article  PubMed  CAS  Google Scholar 

  • Wu, L., Rotschild, M.F., Warner, C.M. (1995). Mapping of the SLA complex class III region by pulsed field gel electrophoresis. Mamm. Genome, in press.

  • Xu, Y., Rotschild, M.F., Warner, C.M. (1992). Mapping of the SLA complex of miniature swine: mapping of the SLA gene complex by pulsed field gel electrophoresis. Mamm. Genome 2, 2–10.

    Article  PubMed  CAS  Google Scholar 

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Peelman, L.J., Chardon, P., Vaiman, M. et al. A detailed physical map of the porcine major histocompatibility complex (MHC) class III region: Comparison with human and mouse MHC class III regions. Mammalian Genome 7, 363–367 (1996). https://doi.org/10.1007/s003359900105

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  • DOI: https://doi.org/10.1007/s003359900105

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