Skip to main content
Log in

Characterization of two novel family 12 xyloglucanases from the thermophilic Rhizomucor miehei

  • Biotechnologically relevant enzymes and proteins
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Two novel glycoside hydrolase (GH) family 12 xyloglucanase genes (designated RmXEG12A and RmXEG12B) were cloned from the thermophilic fungus Rhizomucor miehei. Both genes contained open reading frames of 729 bp encoding 242 amino acids. Their deduced amino acid sequences shared 68 % identity with each other and less than 60 % with other xyloglucanases. The two genes, without the sequences for the signal peptides, were cloned and successfully expressed in Escherichia coli as active xyloglucanases, designated RmXEG12A and RmXEG12B, with similar molecular masses—25.6 and 25.9 kDa, respectively. RmXEG12A showed optimal activity at pH 6.5 and 65 °C, RmXEG12B at pH 5.0 and 60 °C. Both recombinant xyloglucanases displayed very high specific activities, 6,681.4 and 3,092.2 U mg−1, respectively, toward tamarind xyloglucan, but no activity toward carboxymethylcellulose, Avicel, or p-nitrophenyl derivatives. The main products of tamarind xyloglucan hydrolysis by the two xyloglucanases were XXXG, XXLG/XLXG, and XLLG (where G is an unsubstituted β-d-Glc residue, X is a xylosylated β-d-Glc residue, and L is a β-d-Glc residue substituted by xylosyl-galactose).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Ariza A, Eklöf JM, Spadiut O, Offen WA, Roberts SM, Besenmatter W, Friis EP, Skjøt M, Wilson KS, Brumer H, Davies G (2011) Structure and activity of Paenibacillus polymyxa xyloglucanase from glycoside hydrolase family 44. J Biol Chem 286:33890–33900

    Article  PubMed  CAS  Google Scholar 

  • Bauer S, Vasu P, Mort AJ, Somerville CR (2005) Cloning, expression, and characterization of an oligoxyloglucan reducing end-specific xyloglucanobiohydrolase from Aspergillus nidulans. Carbohydr Res 340:2590–2597

    Article  PubMed  CAS  Google Scholar 

  • Baumann MJ, Eklöf JM, Michel G, Kallas AM, Teeri TT, Czjzek M, Brumer H (2007) Structural evidence for the evolution of xyloglucanase activity from xyloglucan endo-transglycosylases: biological implications for cell wall metabolism. Plant Cell 19:1947–1963

    Article  PubMed  CAS  Google Scholar 

  • Benkö Z, Siika-aho M, Viikari L, Réczey K (2008) Evaluation of the role of xyloglucanase in the enzymatic hydrolysis of lignocellulosic substrates. Enzyme Microb Technol 43:109–114

    Article  Google Scholar 

  • Damásio AR, Ribeiro LF, Ribeiro LF, Furtado GP, Segato F, Almeida FB, Crivellari AC, Buckeridge MS, Souza TA, Murakami MT, Ward RJ, Prade RA, Polizeli ML (2012) Functional characterization and oligomerization of a recombinant xyloglucan-specific endo-β-1,4-glucanase (GH12) from Aspergillus niveus. Biochim Biophys Acta 1824:461–467

    Article  PubMed  Google Scholar 

  • Enkhbaatar B, Temuujin U, Lim J, Chi W, Chang Y, Hong S (2012) Identification and characterization of a xyloglucan-specific family 74 glycosyl hydrolase from Streptomyces coelicolor A3(2). Appl Environ Microbiol 78:607–611

    Article  PubMed  CAS  Google Scholar 

  • Fry SC, York WS, Albersheim P, Darvill A, Hayashi T, Joseleau JP, Kato Y, Pérez Lorences E, Maclachlan GA, McNeil M, Mort AJ, Grant Reid JS, Seitz HU, Selvendran RR, Voragen AGJ, White AR (1993) An unambiguous nomenclature for xyloglucan-derived oligosaccharides. Physiol Plant 89:1–3

    Article  CAS  Google Scholar 

  • Gloster TM, Ibatullin FM, Macauley K, Eklöf JM, Roberts S, Turkenburg JP, Bjørnvad ME, Jørgensen PL, Danielsen S, Johansen KS, Borchert TV, Wilson KS, Brumer H, Davies GJ (2007) Characterization and three-dimensional structures of two distinct bacterial xyloglucanases from families GH5 and GH12. J Biol Chem 282:19177–19189

    Article  PubMed  CAS  Google Scholar 

  • Goedegebuur F, Fowler F, Phillips J, van der Kley P, van Solingen P, Dankmeyer L, Power SD (2002) Cloning and relational analysis of 15 novel fungal endoglucanases from family 12 glycosyl hydrolase. Curr Genet 41:89–98

    Article  PubMed  CAS  Google Scholar 

  • Grishutin SG, Gusakov AV, Markov AV, Ustinov BB, Semenova MV, Sinitsyn AP (2004) Specific xyloglucanases as a new class of polysaccharide-degrading enzymes. Biochim Biophys Acta 1674:268–281

    Article  PubMed  CAS  Google Scholar 

  • Habrylo O, Song X, Forster A, Jeltsch JM, Phalip V (2012) Characterization of the four GH12 endoxylanases from the plant pathogen Fusarium graminearum. J Microbiol Biotechnol 22:1118–1126

    Article  PubMed  CAS  Google Scholar 

  • Hakamada Y, Arata S, Ohashi S (2011) Purification and characterization of a xyloglucan-specific glycosyl hydrolase from Aspergillus oryzae RIB40. J Appl Glycosci 58:47–51

    Article  CAS  Google Scholar 

  • Hayashi T, Kaida R (2011) Functions of xyloglucan in plant cells. Mol Plant 4:17–24

    Article  PubMed  CAS  Google Scholar 

  • Hoffman M, Jia Z, Peña MJ, Cash M, Harper A, Blackburn AR, Darvill A, York WS (2005) Structural analysis of xyloglucans in the primary cell walls of plants in the subclass Asteridae. Carbohydr Res 340:1826–1840

    Article  PubMed  CAS  Google Scholar 

  • Ichinose H, Araki Y, Michikawa M, Harazono K, Yaoi K, Karita S, Kaneko S (2012) Characterization of an endo-processive type xyloglucanase having β-1,4-glucan binding module and an endo-type xyloglucanase from Streptomyces avermitilis. Appl Environ Microbiol 78:7939–7945

    Article  PubMed  CAS  Google Scholar 

  • Irwin DC, Cheng M, Xiang B, Rose JKC, Wilson DB (2003) Cloning, expression and characterization of a family-74 xyloglucanase from Thermobifida fusca. Eur J Biochem 270:3083–3091

    Article  PubMed  CAS  Google Scholar 

  • Ishida T, Yaoi K, Hiyoshi A, Igarashi K, Samejima M (2007) Substrate recognition by glycoside hydrolase family 74 xyloglucanase from the basidiomycete Phanerochaete chrysosporium. FEBS J 274:5727–5736

    Article  PubMed  CAS  Google Scholar 

  • Katrolia P, Jia H, Yan Q, Song S, Jiang Z, Xu H (2012) Characterization of a protease-resistant α-galactosidase from the thermophilic fungus Rhizomucor miehei and its application in removal of raffinose family oligosaccharides. Bioresour Technol 110:578–586

    Article  PubMed  CAS  Google Scholar 

  • Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9:299–306

    Article  PubMed  CAS  Google Scholar 

  • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685

    Article  PubMed  CAS  Google Scholar 

  • Lodhi MA, Ye GN, Weeden NF, Reisch BI (1994) A simple and efficient method for DNA extractions from grape vine cultivars and Vitis species. Plant Mol Biol Rep 12:6–13

    Article  CAS  Google Scholar 

  • Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the folin phenol reagent. J Biol Chem 193:265–275

    Google Scholar 

  • Maheshwari R, Bharadwaj G, Bhat MK (2000) Thermophilic fungi: their physiology and enzymes. Microbiol Mol Biol Rev 64:461–488

    Article  PubMed  CAS  Google Scholar 

  • Martinez-Fleites C, Guerreiro CI, Baumann MJ, Taylor EJ, Prates JA, Ferreira LM, Fontes CM, Brumer H, Davies GJ (2005) Crystal structures of Clostridium thermocellum xyloglucanase, XGH74A, reveal the structural basis for xyloglucan recognition and degradation. J Biol Chem 281:24922–24933

    Article  Google Scholar 

  • Master ER, Zheng Y, Storms R, Tsang A, Powlowski J (2008) A xyloglucan-specific family 12 glycosyl hydrolase from Aspergillus niger: recombinant expression, purification and characterization. Biochem J 411:161–170

    Article  PubMed  CAS  Google Scholar 

  • Menon V, Prakash G, Rao M (2010) Enzymatic hydrolysis and ethanol production using xyloglucanase and Debaromyces hansenii from tamarind kernel powder: galactoxyloglucan predominant hemicellulose. J Biotechnol 148:233–239

    Article  PubMed  CAS  Google Scholar 

  • Miller GL (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426–428

    Article  CAS  Google Scholar 

  • Nazir A, Soni R, Saini HS, Manhas RK, Chadha BS (2009) Purification and characterization of an endo-glucanase from Aspergillus terreus highly active against barley β-glucan and xyloglucan. World J Microbiol Biotechnol 25:1189–1197

    Article  CAS  Google Scholar 

  • Pauly M, Andersen LN, Kauppinen S, Kofod LV, York WS, Albersheim P, Darvill A (1999) A xyloglucan-specific endo-β-1,4-glucanase from Aspergillus aculeatus: expression cloning in yeast, purification and characaterization of the recombinant enzyme. Glycobiology 9:93–100

    Article  PubMed  CAS  Google Scholar 

  • Pol D, Menon V, Rao M (2012) Biochemical characterization of a novel thermostable xyloglucanase from an alkalothermophilic Thermomonospora sp. Extremophiles 16:135–146

    Article  PubMed  CAS  Google Scholar 

  • Powlowski J, Mahajan S, Schapira M, Master ER (2009) Substrate recognition and hydrolysis by a fungal xyloglucan-specific family 12 hydrolase. Carbohydr Res 344:1175–1179

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Sandgren M, Shaw A, Ropp TH, Wu S, Bott R, Cameron AD, Ståhlberg J, Mitchinson C, Jones TA (2001) The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 Å resolution. J Mol Biol 308:295–310

    Article  PubMed  CAS  Google Scholar 

  • Sinitsyna OA, Fedorova EA, Pravilnikov AG, Rozhkova AM, Skomarovsky AA, Matys VY, Bubnova TM, Okunev ON, Vinetsky YP, Sinitsyn AP (2010) Isolation and properties of xyloglucanases of Penicillium sp. Biochemistry (Mosc) 75:41–49

    Article  CAS  Google Scholar 

  • Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res 31:3381–3385

    Article  PubMed  CAS  Google Scholar 

  • Vlasenko E, Schülein M, Cherry J, Xu F (2010) Substrate specificity of family 5, 6, 7, 9, 12, and 45 endoglucanases. Bioresour Technol 101:2405–2411

    Article  PubMed  CAS  Google Scholar 

  • Warner CD, Go RM, García-Salinas C, Ford C, Reilly PJ (2011) Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1. Enzyme Microb Technol 48:27–32

    Article  PubMed  CAS  Google Scholar 

  • Wong DD, Chan VJ, McCormack AA, Batt SB (2010) A novel xyloglucan-specific endo-β-1,4-glucanase: biochemical properties and inhibition studies. Appl Microbiol Biotechnol 86:1463–1471

    Article  PubMed  CAS  Google Scholar 

  • Yang SQ, Yan QJ, Jiang ZQ, Fan GS, Wang L (2008) Biochemical characterization of a novel thermostable β-1,3-1,4-glucanase (lichenase) from Paecilomyces thermophila. J Agric Food Chem 56:5345–5351

    Article  PubMed  CAS  Google Scholar 

  • Yaoi K, Mitsuishi Y (2004) Purification, characterization, cDNA cloning, and expression of a xyloglucan endoglucanase from Geotrichum sp. M128. FEBS Lett 560:45–50

    Article  PubMed  CAS  Google Scholar 

  • Yaoi K, Nakai T, Kameda Y, Hiyoshi A, Mitsuishi Y (2005) Cloning and characterization of two xyloglucanases from Paenibacillus sp. strain KM21. Appl Environ Microbiol 71:7670–7678

    Article  PubMed  CAS  Google Scholar 

  • Yoshizawa T, Shimizu T, Hirano H, Sato M, Hashimoto H (2012) Structural basis for inhibition of xyloglucan-specific endo-β-1,4-glucanase (XEG) by XEG-protein inhibitor. J Biol Chem 287:18710–18716

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Dr. Camille Vainstein for critical reading of the manuscript. This work was financially supported by the Program for the National Natural Science Foundation of China (Project No. 31071508) and the National High Technology Research and Development Program of China (863 Program, No. 2011AA100905).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zhengqiang Jiang.

Additional information

Shuang Song and Yanbin Tang contributed equally to this work.

Electronic supplementary material

Below is the link to the electronic supplementary material.

ESM 1

(PDF 613 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Song, S., Tang, Y., Yang, S. et al. Characterization of two novel family 12 xyloglucanases from the thermophilic Rhizomucor miehei . Appl Microbiol Biotechnol 97, 10013–10024 (2013). https://doi.org/10.1007/s00253-013-4770-8

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-013-4770-8

Keywords

Navigation