Abstract
Arylamine N-acetyltransferase 1 (NAT1) plays a pivotal role in the metabolism of carcinogens and is a drug target for cancer prevention and/or treatment. A protein–ligand virtual screening of 2 million chemicals was ranked for predicted binding affinity towards the inhibition of human NAT1. Sixty of the five hundred top-ranked compounds were tested experimentally for inhibition of recombinant human NAT1 and N-acetyltransferase 2 (NAT2). The most promising compound 9,10-dihydro-9,10-dioxo-1,2-anthracenediyl diethyl ester (compound 10) was found to be a potent and selective NAT1 inhibitor with an in vitro IC50 of 0.75 µM. Two structural analogs of this compound were selective but less potent for inhibition of NAT1 whereas a third structural analog 1,2-dihydroxyanthraquinone (a compound 10 hydrolysis product also known as Alizarin) showed comparable potency and efficacy for human NAT1 inhibition. Compound 10 inhibited N-acetylation of the arylamine carcinogen 4-aminobiphenyl (ABP) both in vitro and in DNA repair-deficient Chinese hamster ovary (CHO) cells in situ stably expressing human NAT1 and CYP1A1. Compound 10 and Alizarin effectively inhibited NAT1 in cryopreserved human hepatocytes whereas inhibition of NAT2 was not observed. Compound 10 caused concentration-dependent reductions in DNA adduct formation and DNA double-strand breaks following metabolism of aromatic amine carcinogens beta-naphthylamine and/or ABP in CHO cells. Compound 10 inhibited proliferation and invasion in human breast cancer cells and showed selectivity towards tumorigenic versus non-tumorigenic cells. In conclusion, our study identifies potent, selective, and efficacious inhibitors of human NAT1. Alizarin’s ability to inhibit NAT1 could reduce breast cancer metastasis particularly to bone.
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The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
Abbreviations
- NAT1:
-
Arylamine N-acetyltransferase 1
- NAT2:
-
Arylamine N-acetyltransferase 2
- PABA:
-
p-Aminobenzoic acid
- SMZ:
-
Sulfamethazine
- BNA:
-
Beta-naphthylamine
- ABP:
-
4-Aminobiphenyl
- CHO:
-
Chinese hamster ovary
- AcCoA:
-
Acetyl coenzyme A
- HPLC:
-
High performance liquid chromatography
- dG:
-
Deoxyguanosine
- N-OH-ABP:
-
N-Hydroxy-4-aminobiphenyl
References
Bendaly J, Doll MA, Millner LM, Metry KJ, Smith NB, Pierce WM Jr et al (2009) Differences between human slow N-acetyltransferase 2 alleles in levels of 4-aminobiphenyl-induced DNA adducts and mutations. Mutat Res 671(1–2):13–19. https://doi.org/10.1016/j.mrfmmm.2009.08.003
Butcher NJ, Minchin RF (2012) Arylamine N-acetyltransferase 1: a novel drug target in cancer development. Pharmacol Rev 64(1):147–165. https://doi.org/10.1124/pr.110.004275
Carlisle SM, Trainor PJ, Hong KU, Doll MA, Hein DW (2020) CRISPR/Cas9 knockout of human arylamine N-acetyltransferase 1 in MDA-MB-231 breast cancer cells suggests a role in cellular metabolism. Sci Rep 10(1):9804. https://doi.org/10.1038/s41598-020-66863-4
Cascorbi I, Roots I, Brockmoller J (2001) Association of NAT1 and NAT2 polymorphisms to urinary bladder cancer: significantly reduced risk in subjects with NAT1*10. Cancer Res 61(13):5051–5056
Doll MA, Hein DW (2017) Genetic heterogeneity among slow acetylator N-acetyltransferase 2 phenotypes in cryopreserved human hepatocytes. Arch Toxicol 91(7):2655–2661. https://doi.org/10.1007/s00204-017-1988-8
Fotia C, Avnet S, Granchi D, Baldini N (2012) The natural compound Alizarin as an osteotropic drug for the treatment of bone tumors. J Orthop Res 30(9):1486–1492. https://doi.org/10.1002/jor.22101
Fretland AJ, Doll MA, Leff MA, Hein DW (2001a) Functional characterization of nucleotide polymorphisms in the coding region of N-acetyltransferase 1. Pharmacogenetics 11(6):511–520. https://doi.org/10.1097/00008571-200108000-00006
Fretland AJ, Leff MA, Doll MA, Hein DW (2001b) Functional characterization of human N-acetyltransferase 2 (NAT2) single nucleotide polymorphisms. Pharmacogenetics 11(3):207–215. https://doi.org/10.1097/00008571-200104000-00004
Gemignani F, Landi S, Szeszenia-Dabrowska N, Zaridze D, Lissowska J, Rudnai P et al (2007) Development of lung cancer before the age of 50: the role of xenobiotic metabolizing genes. Carcinogenesis 28(6):1287–1293. https://doi.org/10.1093/carcin/bgm021
Goodfellow GH, Dupret JM, Grant DM (2000) Identification of amino acids imparting acceptor substrate selectivity to human arylamine acetyltransferases NAT1 and NAT2. Biochem J 348(Pt 1):159–166
Hein DW, Doll MA, Rustan TD, Gray K, Feng Y, Ferguson RJ et al (1993) Metabolic activation and deactivation of arylamine carcinogens by recombinant human NAT1 and polymorphic NAT2 acetyltransferases. Carcinogenesis 14:1633–1638. https://doi.org/10.1093/carcin/14.8.1633
Hein DW, Doll MA, Fretland AJ, Leff MA, Webb SJ, Xiao GH et al (2000) Molecular genetics and epidemiology of the NAT1 and NAT2 acetylation polymorphisms. Cancer Epidemiol Biomark Prev 9(1):29–42
Hein DW, Leff MA, Ishibe N, Sinha R, Frazier HA, Doll MA et al (2002) Association of prostate cancer with rapid N-acetyltransferase 1 (NAT1*10) in combination with slow N-acetyltransferase 2 acetylator genotypes in a pilot case-control study. Environ Mol Mutagen 40(3):161–167. https://doi.org/10.1002/em.10103
Hein DW, Doll MA, Nerland DE, Fretland AJ (2006) Tissue distribution of N-acetyltransferase 1 and 2 catalyzing the N-acetylation of 4-aminobiphenyl and O-acetylation of N-hydroxy-4-aminobiphenyl in the congenic rapid and slow acetylator Syrian hamster. Mol Carcinog 45(4):230–238. https://doi.org/10.1002/mc.20164
Hein DW, Fakis G, Boukouvala S (2018) Functional expression of human arylamine N-acetyltransferase NAT1*10 and NAT1*11 alleles: a mini review. Pharmacogenet Genom 28(10):238–244. https://doi.org/10.1097/FPC.0000000000000350
Höhne S, Gerullis H, Blaszkewicz M et al (2017) N-acetyltransferase 1*10 genotype in bladder cancer patients. J Toxicol Environ Health A 80(7–8):417–422. https://doi.org/10.1080/10937404.2017.1304727
Husain A, Zhang X, Doll MA, States JC, Barker DF, Hein DW (2007a) Identification of N-acetyltransferase 2 (NAT2) transcription start sites and quantitation of NAT2-specific mRNA in human tissues. Drug Metab Dispos 35(5):721–727. https://doi.org/10.1124/dmd.106.014621
Husain A, Zhang X, Doll MA, States JC, Barker DF, Hein DW (2007b) Functional analysis of the human N-acetyltransferase 1 major promoter: quantitation of tissue expression and identification of critical sequence elements. Drug Metab Dispos 35(9):1649–1656. https://doi.org/10.1124/dmd.107.016485
Irwin JJ, Shoichet BK (2005) ZINC–a free database of commercially available compounds for virtual screening. J Chem Inf Model 45(1):177–182. https://doi.org/10.1021/ci049714+
Ishibe N, Sinha R, Hein DW, Kulldorff M, Strickland P, Fretland AJ et al (2002) Genetic polymorphisms in heterocyclic amine metabolism and risk of colorectal adenomas. Pharmacogenetics 12(2):145–150. https://doi.org/10.1097/00008571-200203000-00008
Jain AN (2007) Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search. J Comput Aided Mol Des 21(5):281–306. https://doi.org/10.1007/s10822-007-9114-2
Katoh T, Inatomi H, Yang M, Kawamoto T, Matsumoto T, Bell DA (1999) Arylamine N-acetyltransferase 1 (NAT1) and 2 (NAT2) genes and risk of urothelial transitional cell carcinoma among Japanese. Pharmacogenetics 9(3):401–404. https://doi.org/10.1097/00008571-199906000-00017
Kukongviriyapan V, Phromsopha N, Tassaneeyakul W, Kukongviriyapan U, Sripa B et al (2006) Inhibitory effects of polyphenolic compounds on human arylamine N-acetyltransferase 1 and 2. Xenobiotica 36(1):15–28. https://doi.org/10.1080/00498250500489901
Laurieri N, Egleton JE, Russell AJ (2018) Chapter 4.2, Human arylamine N-acetyltransferase 1 and breast cancer. In: Laurieri N, Sim E (eds) Arylamine N-acetyltransferases in health and disease: from pharmacogenetics to drug discovery and diagnostics. World Scientific Publishing, Singapore, pp 351–384. https://doi.org/10.1142/10763
Li D, Jiao L, Li Y, Doll MA, Hein DW, Bondy ML et al (2006) Polymorphisms of cytochrome P4501A2 and N-acetyltransferase genes, smoking, and risk of pancreatic cancer. Carcinogenesis 27(1):103–111. https://doi.org/10.1093/carcin/bgi171
Lilla C, Verla-Tebit E, Risch A, Jager B, Hoffmeister M, Brenner H et al (2006) Effect of NAT1 and NAT2 genetic polymorphisms on colorectal cancer risk associated with exposure to tobacco smoke and meat consumption. Cancer Epidemiol Biomark Prev 15(1):99–107. https://doi.org/10.1158/1055-9965
Malka F, Dairou J, Ragunathan N, Dupret JM, Rodrigues-Lima F (2009) Mechanisms and kinetics of human arylamine N-acetyltransferase 1 inhibition by disulfiram. FEBS J 276(17):4900–4908. https://doi.org/10.1111/j.1742-4658.2009.07189.x
Millikan RC, Pittman GS, Newman B, Tse CK, Selmin O, Rockhill B et al (1998) Cigarette smoking, N-acetyltransferases 1 and 2, and breast cancer risk. Cancer Epidemiol Biomark Prev 7(5):371–378
Millner LM, Doll MA, Cai J, States JC, Hein DW (2012a) NATb/NAT1*4 promotes greater arylamine N-acetyltransferase 1 mediated DNA adducts and mutations than NATa/NAT1*4 following exposure to 4-aminobiphenyl. Mol Carcinog 51(8):636–646. https://doi.org/10.1002/mc.20836
Millner LM, Doll MA, Cai J, States JC, Hein DW (2012b) Phenotype of the most common “slow acetylator” arylamine N-acetyltransferase 1 genetic variant (NAT1*14B) is substrate-dependent. Drug Metab Dispos 40(1):198–204. https://doi.org/10.1124/dmd.111.041855
Millner LM, Doll MA, Stepp MW, States JC, Hein DW (2012c) Functional analysis of arylamine N-acetyltransferase 1 (NAT1) NAT1*10 haplotypes in a complete NATb mRNA construct. Carcinogenesis 33(2):348–355. https://doi.org/10.1093/carcin/bgr273
Morton LM, Schenk M, Hein DW, Davis S, Zahm SH, Cozen W et al (2006) Genetic variation in N-acetyltransferase 1 (NAT1) and 2 (NAT2) and risk of non-Hodgkin lymphoma. Pharmacogenet Genomics 16(8):537–545. https://doi.org/10.1097/01.fpc.0000215071.59836.29
Morton LM, Bernstein L, Wang SS, Hein DW, Rothman N, Colt JS et al (2007) Hair dye use, genetic variation in N-acetyltransferase 1 (NAT1) and 2 (NAT2), and risk of non-Hodgkin lymphoma. Carcinogenesis 28(8):1759–1764. https://doi.org/10.1093/carcin/bgm121
NTP (National Toxicology Program) (2016) Report on Carcinogens, Fourteenth Edition. Research Triangle Park, NC: U.S. Department of Health and Human Services, Public Health Service; 2016. https://ntp.niehs.nih.gov/go/roc14. Accessed 19 Sept 2021
Ragunathan N, Dairou J, Pluvinage B, Martins M, Petit E, Janel N et al (2008) Identification of the xenobiotic-metabolizing enzyme arylamine N-acetyltransferase 1 as a new target of cisplatin in breast cancer cells: molecular and cellular mechanisms of inhibition. Mol Pharmacol 73(6):1761–1768. https://doi.org/10.1124/mol.108.045328
Rovito PM Jr, Morse PD, Spinek K, Newman N, Jones RF, Wang CY et al (2005) Heterocyclic amines and genotype of N-acetyltransferases as risk factors for prostate cancer. Prostate Cancer Prostatic Dis 8(1):69–74. https://doi.org/10.1038/sj.pcan.4500780
Russell AJ, Westwood IM, Crawford MH, Robinson J, Kawamura A, Redfield C et al (2009) Selective small molecule inhibitors of the potential breast cancer marker, human arylamine N-acetyltransferase 1, and its murine homologue, mouse arylamine N-acetyltransferase 2. Bioorg Med Chem 17(2):905–918. https://doi.org/10.1016/j.bmc.2008.11.032
Salazar-González RA, Zhang X, Doll MA, Lykoudi A, Hein DW (2019) Role of the human N-acetyltransferase 2 genetic polymorphism in metabolism and genotoxicity of 4, 4’- methylenedianiline. Arch Toxicol 93(8):2237–2246. https://doi.org/10.1007/s00204-019-02516-4
Stepp MW, Doll MA, Carlisle SM, States JC, Hein DW (2018) Genetic and small molecule inhibition of arylamine N-acetyltransferase 1 reduces anchorage-independent growth in human breast cancer cell line MDA-MB-231. Mol Carcinog 57(4):549–558. https://doi.org/10.1002/mc.22779
Suzuki H, Morris JS, Li Y, Doll MA, Hein DW, Liu J et al (2008) Interaction of the cytochrome P4501A2, SULT1A1 and NAT gene polymorphisms with smoking and dietary mutagen intake in modification of the risk of pancreatic cancer. Carcinogenesis 29(6):1184–1191. https://doi.org/10.1093/carcin/bgn085
Taylor JA, Umbach DM, Stephens E, Castranio T, Paulson D, Robertson C et al (1998) The role of N-acetylation polymorphisms in smoking-associated bladder cancer: evidence of a gene-gene-exposure three-way interaction. Cancer Res 58(16):3603–3610
Tiang JM, Butcher NJ, Minchin RF (2010) Small molecule inhibition of arylamine N-acetyltransferase Type I inhibits proliferation and invasiveness of MDA-MB-231 breast cancer cells. Biochem Biophys Res Commun 393(1):95–100. https://doi.org/10.1016/j.bbrc.2010.01.087
Tiang JM, Butcher NJ, Cullinane C, Humbert PO, Minchin RF (2011) RNAi-mediated knock-down of arylamine N-acetyltransferase-1 expression induces E-cadherin up-regulation and cell-cell contact growth inhibition. PLoS ONE 6(2):e17031. https://doi.org/10.1371/journal.pone.0017031
Tiang JM, Butcher NJ, Minchin RF (2015) Effects of human arylamine N-acetyltransferase I knockdown in triple-negative breast cancer cell lines. Cancer Med 4(4):565–574. https://doi.org/10.1002/cam4.415
Walker K, Ginsberg G, Hattis D, Johns DO, Guyton KZ, Sonawane B (2009) Genetic polymorphism in N-Acetyltransferase (NAT): Population distribution of NAT1 and NAT2 activity. J Toxicol Environ Health Part b, Critical Reviews 12(5–6):440–472. https://doi.org/10.1080/10937400903158383
Walraven JM, Trent JO, Hein DW (2008a) Structure-function analyses of single nucleotide polymorphisms in human N-acetyltransferase 1. Drug Metab Rev 40(1):169–184. https://doi.org/10.1080/03602530701852917
Walraven JM, Zang Y, Trent JO, Hein DW (2008b) Structure/function evaluations of single nucleotide polymorphisms in human N-acetyltransferase 2. Curr Drug Metab 9(6):471–486. https://doi.org/10.2174/138920008784892065
Wang S, Hanna D, Sugamori KS, Grant DM (2019) Primary aromatic amines and cancer: Novel mechanistic insights using 4-aminobiphenyl as a model carcinogen. Pharmacol Ther 200:179–189. https://doi.org/10.1016/j.pharmthera.2019.05.004
Weber CA, Salazar EP, Stewart SA, Thompson LH (1988) Molecular cloning and biological characterization of a human gene, ERCC2, that corrects the nucleotide excision repair defect in CHO UV5 cells. Mol Cell Biol 8(3):1137–1146. https://doi.org/10.1128/mcb.8.3.1137-1146.1988
Westwood IM, Kawamura A, Russell AJ, Sandy J, Davies SG, Sim E (2011) Novel small-molecule inhibitors of arylamine N-acetyltransferases: drug discovery by high-throughput screening. Comb Chem High Throughput Screen 14(2):117–124. https://doi.org/10.2174/138620711794474051
Wikman H, Thiel S, Jager B, Schmezer P, Spiegelhalder B, Edler L et al (2001) Relevance of N-acetyltransferase 1 and 2 (NAT1, NAT2) genetic polymorphisms in non-small cell lung cancer susceptibility. Pharmacogenetics 11(2):157–168. https://doi.org/10.1097/00008571-200103000-00006
Wu H, Dombrovsky L, Tempel W, Martin F, Loppnau P, Goodfellow GH et al (2007) Structural basis of substrate-binding specificity of human arylamine N-acetyltransferases. J Biol Chem 282(41):30189–30197. https://doi.org/10.1074/jbc.M704138200
Wu K, Wang X, Xie Z, Liu Z, Lu Y (2013) N-acetyltransferase 1 polymorphism and bladder cancer susceptibility: a meta-analysis of epidemiological studies. J Int Med Res 41(1):31–37. https://doi.org/10.1177/0300060513476988
Zhang K, Gao L, Wu Y, Chen J, Lin C, Liang S et al (2015) NAT1 polymorphisms and cancer risk: a systematic review and meta-analysis. Int J Clin Exp Med 8(6):9177–9191
Zhao C, Cai X, Wang Y, Wang D, Wang T, Gong H et al (2020) NAT1 promotes osteolytic metastasis in luminal breast cancer by regulating the bone metastatic niche via NF-κB/IL-1B signaling pathway. Am J Cancer Res 10(8):2464–2479
Zheng W, Deitz AC, Campbell DR, Wen WQ, Cerhan JR Jr, Sellers TA et al (1999) N-acetyltransferase 1 genetic polymorphism, cigarette smoking, well-done meat intake, and breast cancer risk. Cancer Epidemiol Biomark Prev 8(3):233–239
Acknowledgements
Portions of this work constitute partial fulfillment for the PhD in pharmacology and toxicology at the University of Louisville to Carmine S. Leggett. We thank Jason Walraven, a prior PhD graduate student in our laboratory, for his contributions towards screening the ZINC library.
Funding
This work was funded in part by NIH grants T32-ES011564, P20-RR18733, and P30-ES030283.
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CSL: conceptualization, methodology, validation, formal analysis, investigation, writing—original draft, writing—review & editing, visualization. MAD: formal analysis, investigation, writing—review & editing. RAS-G: formal analysis, investigation, writing—review & editing. MH: formal analysis, investigation, writing—review & editing. JOT: conceptualization, methodology, software, validation, formal analysis, resources, writing—review & editing. DWH: conceptualization, methodology, validation, formal analysis, resources, writing—review & editing, visualization, supervision.
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Leggett, C.S., Doll, M.A., Salazar-González, R.A. et al. Identification and characterization of potent, selective, and efficacious inhibitors of human arylamine N-acetyltransferase 1. Arch Toxicol 96, 511–524 (2022). https://doi.org/10.1007/s00204-021-03194-x
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DOI: https://doi.org/10.1007/s00204-021-03194-x