Abstract
An isolate of Streptomyces decoyicus M* (code of the isolate) was identified by the sequencing of 16S rRNA gene. It was grown on solid media and secondary metabolites were extracted with n-butanol. The extract was dried and run in a sodium dodecyl sulphate–polyacrylamide gel (SDS–PAGE, 10%). Two main bands obtained were sliced and the metabolites were regained in n-butanol. These two samples were then identified by gas-chromatography–mass spectrometry (GC–MS), and Fourier-transform infrared spectroscopy (FT-IR). The results demonstrated that tromethamine- and 1-dodecanol were the main constituents (band 1: 61% and 17.7%; band 2: 41% and 54%, respectively). This finding maintained that the isolate of Streptomyces decoyicus produced high amounts tromethamine- and 1-dodecanol under the conditions investigated.
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References
Berdy J (1995) Are Actinomycetes exhausted as a source of secondary metabolites? Russian Biotechnol Biotekhnol 7:3–23
Berdy J (2012) Thoughts and facts about antibiotics: where we are now and where we are heading. J Antibiot 65:385–395
Besson G, Drits VA (1997) Refined relationships between chemical composition of dioctahedral fine-grained mica minerals and their infrared spectra within the OH stretching region. Part I: identification of the OH stretching bands. Clays Clay Miner 45:158–169
Bundale S, Begde D, Pillai D, Gangwani K, Nashikkar N, Kadam K, Upadhyay A (2018) Novel aromatic polyketides from soil Streptomyces spp.: purification, characterization and bioactivity studies. World J Microbiol Biotechnol 34:67
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST plus: architecture and applications. BMC Bioinf 10:421
Chaudhary H, Gopalan N, Shrivastava A, Singh S, Singh A, Yadav J (2013) Antibacterial activity of actinomycetes isolated from different soil samples of Sheopur (A city of central India). J Adv Pharm Technol Res 4:118–123
Çetinkaya S (2021) A novel isolate (S15) of Streptomyces griseobrunneus produces 1-dodecanol. Curr Microbiol 78:144–149
Çetinkaya S, Yenidünya AF, Aksu A, Çelik MS (2021) Purification and characterisation of 1-dodecanol from an isolate of Streptomyces viridodiastaticus. Biocatal Agric Biotechnol 34:1
Dewi TK, Dwi A, Antonius S (2017) Secondary metabolites production by actinomycetes and their antifungal activity. ICBS conference proceedings, international conference on biological science KnE. Life Sci 3:256–264
Dror B, Jurkevitch E, Cytryn E (2020) State-of-the-art methodologies toidentify antimicrobial secondary metabolites in soil bacterial communities-a review. Soil Biol Biochem 147:107838–107847
Elmallah MIY, Cogo S, Constantinescu A, Esposito SE, Abdelfattah MS, Micheau O (2020) Marine actinomycetes-derived secondary metabolites overcome TRAIL-resistance via the intrinsic pathway through down regulation of survive in and XIAP. Cells 9:1760–1778
Erdik E (2008) Organik Kimyada Spektroskopik Yöntemler. Gazi Kitabevi, Ankara, pp 118–152
Goodfellow M, Simpson KE (1987) Ecology of streptomyces. Front Appl Microbiol 2:97–125
Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W (2007) Speciesspecific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73:1146–1152
Katoh K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol 537:39–64
Khattab AI, Babiker EH, Saeed HA (2016) Streptomyces: isolation, optimization of culture conditions and extraction of secondary metabolites. Int Curr Pharmaceut J 5:27–32
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
Klindworth A, Pruesse E, Schweer T, Peplles J, Quast C, Horn M, Glökner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1
Lunt D (2017) HotSHOT DNA extraction. protocols.io. https://doi.org/10.17504/protocols.io.g6vbze6
Manivasagan P, Venkatesan J, Sivakumar K, Kim SK (2013) Marine actinobacterial metabolites: current status and future perspectives. Microbiol Res 168:311–332
Mincer TJ, Jensen PR, Kauffman CA, Fenical W (2002) Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl Environ Microbiol 68(10):5005–5011
Mohan KD, Rajamanickam U (2018) Biodiversity of actinomycetes and secondary metabolites. Inn Orig Inter J Sci 5:21–27
Nayaka S, Nagaraja SK, Chakraborty B, Bhat MP, Swamy PS, Airodagi D, Hiremath H, Rudrappa M, Basavarajappa DS, Pednekar AR (2020) Antimicrobial and enzymatic potential of Streptomyces sp. KAS-1 isolated from the microbiologically unexplored estuary of Kali river ecosystem. Int J Res Pharm Sci 11(2):1655–1666
Pathalam G, Rajendran HAD, Appadurai DR, Gandhi MR, Michael GP, Savarimuthu I, Naifabdulla A (2017) Isolation and molecular characterization of Actinomycetes with antimicrobial and mosquito larvicidal properties. Beni-Suef Univ J Basic Appl Sci 6:209–217
Ramesh S, Rajesh M, Mathivanan N (2009) Characterization of a thermostable alkaline protease produced by marine Streptomyces fungicidicus MML1614. Bioprocess Biosyst Eng 32:791–800
Selim MSM, Abdelhamid SA, Mohamed SS (2021) Secondary metabolites and biodiversity of actinomycetes. J Genet Eng Biotechnol 19:1–13
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
Thirumurugan D, Vijayakumar R, Vadivalagan C, Karthika P, AlamKhane K (2018) Isolation, structure elucidation and antibacterial activity of methyl-4,8-dimethylundecanate from the marine actinobacterium Streptomyces albogriseolus ECR64. Microb Pathog 121:166–172
Usha Nandhini S, Sudha S, Anusha JV, Manisha S (2018) Isolation, Identification and Extraction of antimicrobial compounds produced by Streptomyces sp. from terrestrial soil. Biocatal Agric Biotechnol 5:317–321
Valli S, Sugasini SS, Aysha OS, Nirmala P, Vinoth Kumar P, Reena A (2012) Antimicrobial potential of actinomycetes species isolated from marine environment. Asian Pac J Trop Biomed 2:469–473
Vimal V, Rajam BM, Kannnabiran K (2009) Antimicrobial activity of marine actinomycetes, Nocardiopsis sp. VITSVK 5 (FJ973467). Asian J. Med. Sci. 5:57–63
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The study was funded by the Sivas Cumhuriyet University Scientific Research Projects, Turkey (No. F-2021-639).
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Çelik, M.S., Aksu, A., Yenidünya, A.F. et al. Tromethamine and dodecanol appear to be the major secondary metabolites of Streptomyces decoyicus M*. Arch Microbiol 204, 456 (2022). https://doi.org/10.1007/s00203-022-03076-5
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DOI: https://doi.org/10.1007/s00203-022-03076-5