Abstract
In response to infection or sterile insults, inflammatory programmed cell death is an essential component of the innate immune response to remove infected or damaged cells. PANoptosis is a unique innate immune inflammatory cell death pathway regulated by multifaceted macromolecular complexes called PANoptosomes, which integrate components from other cell death pathways. Growing evidence shows that PANoptosis can be triggered in many physiological conditions, including viral and bacterial infections, cytokine storms, and cancers. However, PANoptosomes at the single cell level have not yet been fully characterized. Initial investigations have suggested that key pyroptotic, apoptotic, and necroptotic molecules including the inflammasome adaptor protein ASC, apoptotic caspase-8 (CASP8), and necroptotic RIPK3 are conserved components of PANoptosomes. Here, we optimized an immunofluorescence procedure to probe the highly dynamic multiprotein PANoptosome complexes across various innate immune cell death-inducing conditions. We first identified and validated antibodies to stain endogenous mouse ASC, CASP8, and RIPK3, without residual staining in the respective knockout cells. We then assessed the formation of PANoptosomes across innate immune cell death-inducing conditions by monitoring the colocalization of ASC with CASP8 and/or RIPK3. Finally, we established an expansion microscopy procedure using these validated antibodies to image the organization of ASC, CASP8, and RIPK3 within the PANoptosome. This optimized protocol, which can be easily adapted to study other multiprotein complexes and other cell death triggers, provides confirmation of PANoptosome assembly in individual cells and forms the foundation for a deeper molecular understanding of the PANoptosome complex and PANoptosis to facilitate therapeutic targeting.
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All datasets generated during this study are contained within the figures and supplement of this manuscript.
References
Gullett JM, Tweedell RE, Kanneganti TD (2022) It's All in the PAN: crosstalk, plasticity, redundancies, switches, and interconnectedness encompassed by panoptosis underlying the totality of cell death-associated biological effects. Cells 11(9):1495
Kuriakose T, Man SM, Malireddi RK, Karki R, Kesavardhana S, Place DE, et al (2016) ZBP1/DAI is an innate sensor of influenza virus triggering the NLRP3 inflammasome and programmed cell death pathways. Sci Immunol 1(2):aag2045
Malireddi RKS, Karki R, Sundaram B, Kancharana B, Lee S, Samir P et al (2021) Inflammatory cell death, PANoptosis, mediated by cytokines in diverse cancer lineages inhibits tumor growth. Immunohorizons 5(7):568–580
Kesavardhana S, Malireddi RKS, Burton AR, Porter SN, Vogel P, Pruett-Miller SM et al (2020) The Zα2 domain of ZBP1 is a molecular switch regulating influenza-induced PANoptosis and perinatal lethality during development. J Biol Chem 295(24):8325–8330
Banoth B, Tuladhar S, Karki R, Sharma BR, Briard B, Kesavardhana S, et al (2020) ZBP1 promotes fungi-induced inflammasome activation and pyroptosis, apoptosis, and necroptosis (PANoptosis). J Biol Chem 295(52):18276–18283
Christgen S, Zhen, M, Kesavardhana S, Karki R, Malireddi RKS, Banoth B, Place DE, Briard B, Sharma BR, Tuladhar S, Samir P, Burton A, Kanneganti T-D (2020) Identification of the PANoptosome: A molecular platform triggering pyroptosis, apoptosis, and necroptosis (PANoptosis). Front Cell Infect Microbiol 10:237
Karki R, Sharma BR, Lee E, Banoth B, Malireddi RKS, Samir P, et al (2020) Interferon regulatory factor 1 regulates PANoptosis to prevent colorectal cancer. JCI insight 5(12):e136720
Zheng M, Williams EP, Malireddi RKS, Karki R, Banoth B, Burton A, et al (2020) Impaired NLRP3 inflammasome activation/pyroptosis leads to robust inflammatory cell death via caspase-8/RIPK3 during coronavirus infection. J Biol Chem 295(41):14040–14052
Malireddi RK, Ippagunta S, Lamkanfi M, Kanneganti TD (2010) Cutting edge: proteolytic inactivation of poly(ADP-ribose) polymerase 1 by the Nlrp3 and Nlrc4 inflammasomes. J Immunol 185(6):3127–3130
Malireddi RKS, Gurung P, Kesavardhana S, Samir P, Burton A, Mummareddy H, et al (2020) Innate immune priming in the absence of TAK1 drives RIPK1 kinase activity–independent pyroptosis, apoptosis, necroptosis, and inflammatory disease. J Exp Med 217(3):jem.20191644
Malireddi RKS, Kesavardhana S, Karki R, Kancharana B, Burton AR, Kanneganti TD (2020) RIPK1 distinctly regulates yersinia-induced inflammatory cell death, PANoptosis. Immunohorizons 4(12):789–796
Zheng M, Karki R, Vogel P, Kanneganti TD (2020) Caspase-6 is a key regulator of innate immunity, inflammasome activation, and host defense. Cell 181(3):674–87.e13
Karki R, Sharma BR, Tuladhar S, Williams EP, Zalduondo L, Samir P et al (2021) Synergism of TNF-α and IFN-γ triggers inflammatory cell death, tissue damage, and mortality in SARS-CoV-2 infection and cytokine shock syndromes. Cell 184(1):149–68.e17
Lee S, Karki R, Wang Y, Nguyen LN, Kalathur RC, Kanneganti TD (2021) AIM2 forms a complex with pyrin and ZBP1 to drive PANoptosis and host defence. Nature 597(7876):415–419
Karki R, Sundaram B, Sharma BR, Lee S, Malireddi RKS, Nguyen LN et al (2021) ADAR1 restricts ZBP1-mediated immune response and PANoptosis to promote tumorigenesis. Cell Rep 37(3):109858
Karki R, Lee S, Mall R, Pandian N, Wang Y, Sharma BR, et al (2022) ZBP1-dependent inflammatory cell death, PANoptosis, and cytokine storm disrupt IFN therapeutic efficacy during coronavirus infection. Sci Immunol 7(74):eabo6294
Kesavardhana S, Kuriakose T, Guy CS, Samir P, Malireddi RKS, Mishra A et al (2017) ZBP1/DAI ubiquitination and sensing of influenza vRNPs activate programmed cell death. J Exp Med 214(8):2217–2229
Cookson BT, Brennan MA (2001) Pro-inflammatory programmed cell death. Trends Microbiol 9(3):113–114
Martinon F, Burns K, Tschopp J (2002) The inflammasome: a molecular platform triggering activation of inflammatory caspases and processing of proIL-beta. Mol Cell 10(2):417–426
Kerr JF, Wyllie AH, Currie AR (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26(4):239–257
Zou H, Henzel WJ, Liu X, Lutschg A, Wang X (1997) Apaf-1, a human protein homologous to C. elegans CED-4, participates in cytochrome c-dependent activation of caspase-3. Cell 90(3):405–413
Kim HE, Du F, Fang M, Wang X (2005) Formation of apoptosome is initiated by cytochrome c-induced dATP hydrolysis and subsequent nucleotide exchange on Apaf-1. Proc Natl Acad Sci U S A 102(49):17545–17550
Li P, Nijhawan D, Budihardjo I, Srinivasula SM, Ahmad M, Alnemri ES et al (1997) Cytochrome c and dATP-dependent formation of Apaf-1/caspase-9 complex initiates an apoptotic protease cascade. Cell 91(4):479–489
Boldin MP, Goncharov TM, Goltsev YV, Wallach D (1996) Involvement of MACH, a novel MORT1/FADD-interacting protease, in Fas/APO-1- and TNF receptor-induced cell death. Cell 85(6):803–815
Muzio M, Chinnaiyan AM, Kischkel FC, O’Rourke K, Shevchenko A, Ni J et al (1996) FLICE, a novel FADD-homologous ICE/CED-3-like protease, is recruited to the CD95 (Fas/APO-1) death–inducing signaling complex. Cell 85(6):817–827
Li H, Zhu H, Xu CJ, Yuan J (1998) Cleavage of BID by caspase 8 mediates the mitochondrial damage in the Fas pathway of apoptosis. Cell 94(4):491–501
Luo X, Budihardjo I, Zou H, Slaughter C, Wang X (1998) Bid, a Bcl2 interacting protein, mediates cytochrome c release from mitochondria in response to activation of cell surface death receptors. Cell 94(4):481–490
Gross A, Yin XM, Wang K, Wei MC, Jockel J, Milliman C et al (1999) Caspase cleaved BID targets mitochondria and is required for cytochrome c release, while BCL-XL prevents this release but not tumor necrosis factor-R1/Fas death. J Biol Chem 274(2):1156–1163
Dhuriya YK, Sharma D (2018) Necroptosis: a regulated inflammatory mode of cell death. J Neuroinflamm 15(1):199
Murphy JM, Czabotar PE, Hildebrand JM, Lucet IS, Zhang JG, Alvarez-Diaz S et al (2013) The pseudokinase MLKL mediates necroptosis via a molecular switch mechanism. Immunity 39(3):443–453
Gong Y, Fan Z, Luo G, Yang C, Huang Q, Fan K et al (2019) The role of necroptosis in cancer biology and therapy. Mol Cancer 18(1):100
Nailwal H, Chan FK (2019) Necroptosis in anti-viral inflammation. Cell Death Differ 26(1):4–13
Zhao J, Jitkaew S, Cai Z, Choksi S, Li Q, Luo J et al (2012) Mixed lineage kinase domain-like is a key receptor interacting protein 3 downstream component of TNF-induced necrosis. Proc Natl Acad Sci USA 109(14):5322–5327
Sun L, Wang H, Wang Z, He S, Chen S, Liao D et al (2012) Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase. Cell 148(1–2):213–227
Newton K, Wickliffe KE, Dugger DL, Maltzman A, Roose-Girma M, Dohse M et al (2019) Cleavage of RIPK1 by caspase-8 is crucial for limiting apoptosis and necroptosis. Nature 574(7778):428–431
Man SM, Hopkins LJ, Nugent E, Cox S, Glück IM, Tourlomousis P et al (2014) Inflammasome activation causes dual recruitment of NLRC4 and NLRP3 to the same macromolecular complex. Proc Natl Acad Sci USA 111(20):7403–7408
Chen X, Zhu R, Zhong J, Ying Y, Wang W, Cao Y et al (2022) Mosaic composition of RIP1-RIP3 signalling hub and its role in regulating cell death. Nat Cell Biol 24(4):471–482
Man SM, Tourlomousis P, Hopkins L, Monie TP, Fitzgerald KA, Bryant CE (2013) Salmonella infection induces recruitment of Caspase-8 to the inflammasome to modulate IL-1beta production. J Immunol 191(10):5239–5246
Sagulenko V, Thygesen SJ, Sester DP, Idris A, Cridland JA, Vajjhala PR et al (2013) AIM2 and NLRP3 inflammasomes activate both apoptotic and pyroptotic death pathways via ASC. Cell Death Differ 20(9):1149–1160
Pierini R, Juruj C, Perret M, Jones CL, Mangeot P, Weiss DS et al (2012) AIM2/ASC triggers caspase-8-dependent apoptosis in Francisella-infected caspase-1-deficient macrophages. Cell Death Differ 19(10):1709–1721
Wang Y, Kanneganti TD (2021) From pyroptosis, apoptosis and necroptosis to PANoptosis: a mechanistic compendium of programmed cell death pathways. Comput Struct Biotechnol J 19:4641–4657
Oberst A, Dillon CP, Weinlich R, McCormick LL, Fitzgerald P, Pop C et al (2011) Catalytic activity of the caspase-8-FLIP(L) complex inhibits RIPK3-dependent necrosis. Nature 471(7338):363–367
Newton K, Sun X, Dixit VM (2004) Kinase RIP3 is dispensable for normal NF-kappa Bs, signaling by the B-cell and T-cell receptors, tumor necrosis factor receptor 1, and Toll-like receptors 2 and 4. Mol Cell Biol 24(4):1464–1469
Ozören N, Masumoto J, Franchi L, Kanneganti TD, Body-Malapel M, Ertürk I et al (2006) Distinct roles of TLR2 and the adaptor ASC in IL-1beta/IL-18 secretion in response to Listeria monocytogenes. J Immunol 176(7):4337–4342
Ishii KJ, Kawagoe T, Koyama S, Matsui K, Kumar H, Kawai T et al (2008) TANK-binding kinase-1 delineates innate and adaptive immune responses to DNA vaccines. Nature 451(7179):725–729
Jones JW, Kayagaki N, Broz P, Henry T, Newton K, O’Rourke K et al (2010) Absent in melanoma 2 is required for innate immune recognition of Francisella tularensis. Proc Natl Acad Sci USA 107(21):9771–9776
Kanneganti TD, Ozoren N, Body-Malapel M, Amer A, Park JH, Franchi L et al (2006) Bacterial RNA and small antiviral compounds activate caspase-1 through cryopyrin/Nalp3. Nature 440(7081):233–236
Hoffmann E, Neumann G, Kawaoka Y, Hobom G, Webster RG (2000) A DNA transfection system for generation of influenza A virus from eight plasmids. Proc Natl Acad Sci USA 97(11):6108–6113
Wang Y, Karki R, Zheng M, Kancharana B, Lee S, Kesavardhana S et al (2021) Cutting edge: caspase-8 is a linchpin in caspase-3 and gasdermin D activation to control cell death, cytokine release, and host defense during influenza A virus infection. J Immunol 207(10):2411–2416
Zhang C, Kang JS, Asano SM, Gao R, Boyden ES (2020) Expansion microscopy for beginners: visualizing microtubules in expanded cultured HeLa cells. Curr Protoc Neurosci 92(1):e96
Malireddi RKS, Gurung P, Mavuluri J, Dasari TK, Klco JM, Chi H et al (2018) TAK1 restricts spontaneous NLRP3 activation and cell death to control myeloid proliferation. J Exp Med 215(4):1023–1034
Messaoud-Nacer Y, Culerier E, Rose S, Maillet I, Rouxel N, Briault S et al (2022) STING agonist diABZI induces PANoptosis and DNA mediated acute respiratory distress syndrome (ARDS). Cell Death Dis 13(3):269
Cui Y, Wang X, Lin F, Li W, Zhao Y, Zhu F et al (2022) MiR-29a-3p improves acute lung injury by reducing alveolar epithelial cell PANoptosis. Aging Dis 13(3):899–909
Lin JF, Hu PS, Wang YY, Tan YT, Yu K, Liao K et al (2022) Phosphorylated NFS1 weakens oxaliplatin-based chemosensitivity of colorectal cancer by preventing PANoptosis. Signal Transduct Target Ther 7(1):54
Xu X, Lan X, Fu S, Zhang Q, Gui F, Jin Q et al (2022) Dickkopf-1 exerts protective effects by inhibiting PANoptosis and retinal neovascularization in diabetic retinopathy. Biochem Biophys Res Commun 617(Pt 2):69–76
Chi D, Lin X, Meng Q, Tan J, Gong Q, Tong Z (2021) Real-time induction of macrophage apoptosis, pyroptosis, and necroptosis by Enterococcus faecalis OG1RF and two root canal isolated strains. Front Cell Infect Microbiol 11:720147
Song M, Xia W, Tao Z, Zhu B, Zhang W, Liu C et al (2021) Self-assembled polymeric nanocarrier-mediated co-delivery of metformin and doxorubicin for melanoma therapy. Drug Deliv 28(1):594–606
Masumoto J, Taniguchi S, Ayukawa K, Sarvotham H, Kishino T, Niikawa N et al (1999) ASC, a novel 22-kDa protein, aggregates during apoptosis of human promyelocytic leukemia HL-60 cells. J Biol Chem 274(48):33835–33838
Chen F, Tillberg PW, Boyden ES (2015) Optical imaging. Expansion microscopy. Science 347(6221):543–548
Glück IM, Mathias GP, Strauss S, Ebert TS, Stafford C, Agam G, et al (2022) Nanoscale organization of the endogenous ASC speck. bioRxiv. https://doi.org/10.1101/2021.09.17.460822
Samson AL, Fitzgibbon C, Patel KM, Hildebrand JM, Whitehead LW, Rimes JS, et al (2021) A toolbox for imaging RIPK1, RIPK3, and MLKL in mouse and human cells. Cell Death Differ 28(7):2126–2144
Bao G, Tang M, Zhao J, Zhu X (2021) Nanobody: a promising toolkit for molecular imaging and disease therapy. EJNMMI Res 11(1):6
Acknowledgements
We thank all members of the Kanneganti laboratory for discussions. We also thank R. Tweedell, PhD, and J. Gullett, PhD, for scientific editing and writing support.
Funding
Research in the Kanneganti laboratory was supported by grants from the US National Institutes of Health (AI101935, AI124346, AI160179, AR056296, and CA253095) and the American Lebanese Syrian Associated Charities to T.D.-K. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
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T.-D.K. is a consultant for Pfizer.
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18_2022_4564_MOESM1_ESM.pdf
Supplemental Figure 1. ASC, RIPK3, and CASP8 form a complex under PANoptotic conditions. A) Quantification of the percentage of cells containing ASC specks in IAV-infected wild type (WT) bone marrow-derived macrophages (BMDMs) at 9 h and 12 h post-infection (h.p.i.). B) BMDMs from the indicated genotypes were mock treated, infected with HSV-1, or treated with a KPT-330 + IFN-β and stained for ASC, RIPK3, and CASP8. Representative images of ASC, RIPK3, CASP8-containing specks are shown. C) Quantification of the percentage of cells containing ASC specks in WT BMDMs treated with KPT-330 + IFN-β for 24 h. D) Compositional analysis of ASC specks in (C). Mean ± standard error is shown. Images are representative of at least three independent experiments
18_2022_4564_MOESM2_ESM.pdf
Supplemental Figure 2. “Firework”-like RIPK3 structure forms during LPS + ATP stimulation, and ASC and CASP8 form a core surrounded by RIPK3 during IAV infection. A) Wild type (WT) bone marrow-derived macrophages (BMDMs) were treated with LPS + ATP and stained for ASC, RIPK3, and CASP8. The cells were expanded as described in the methods section. An ASC, RIPK3, and CASP8-containing speck with “firework”-like RIPK3 structure is shown. B) Fluorescence intensity of ASC, RIPK3, and CASP8 across the “firework” section along the white arrow. X axis indicates the distance along the white arrow traveling from the base of the arrow to the arrowhead. C) Quantification of the percentage of cells containing ASC specks in WT BMDMs treated with LPS + ATP for 10 min. D) Compositional analysis of ASC specks (n ≥ 95) induced by LPS + ATP in (C). Mean ± standard error is shown. E) Expansion microscopy views of a RIPK3/CASP8-containing ASC speck induced by IAV. Images are representative of at least three independent experiments
18_2022_4564_MOESM3_ESM.pdf
Supplemental Figure 3. RIPK3 has no observable functional role in LPS + ATP-mediated inflammasome activation. Bone marrow-derived macrophages (BMDMs) from indicated genotypes were primed with 100 ng/μl LPS for 4 h, then stimulated with the indicated concentration of ATP for 30 min. A) Western blots of RIPK3 phosphorylation (Thr231/Ser232; pRIPK3) and total RIPK3 (tRIPK3) in whole cell lysates from indicated genotypes. B) Cell death measured by Sytox Green staining in the indicated genotypes. Microscopy images (right) showing dead cells denoted by red masking. Sytox green detects lytic types of cell death, where the cellular membranes are compromised. C) Caspases-1, -3, -7, -8, GSDMD, and GSDME cleavage, and total and phosphorylated MLKL in whole cell lysates from the indicated genotypes in mock-treated or LPS + ATP-treated cells. Asterisk denotes nonspecific band. D) Quantification of IL-1β and IL-18 release in the supernatant of cells of the indicated genotypes after LPS + ATP treatment. Lysate and supernatant were prepared at 30 min after ATP stimulation. Mean ± standard error is shown. Results are representative of three independent experiments
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Wang, Y., Pandian, N., Han, JH. et al. Single cell analysis of PANoptosome cell death complexes through an expansion microscopy method. Cell. Mol. Life Sci. 79, 531 (2022). https://doi.org/10.1007/s00018-022-04564-z
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DOI: https://doi.org/10.1007/s00018-022-04564-z