Skip to main content
Log in

Swiss population data on three tetrameric short tandem repeat loci — VWA, HUMTH01, and F13A1 —derived using multiplex PCR and laser fluorescence detection

  • Original Article
  • Published:
International Journal of Legal Medicine Aims and scope Submit manuscript

Abstract

Allele and genotype frequencies for 3 tetrameric short tandem repeat loci VWA, HUMTHO1, and F13A1 were determined in a Swiss population sample using multiplex PCR and subsequent electrophoresis in DNA sequencing gels processed by automated laser fluorescence detection. The technique allows single base pair resolution and rapid typing, with a concomitant reduction in the potential for human transcriptional typing errors. All loci meet Hardy-Weinberg expectations. In addition, there is little evidence for association of alleles among the 3 loci. The allelic frequency data can be used in forensic analyses and paternity tests to estimate the frequency of a multiple STR locus DNA profile in the Swiss population.

Zusammenfassung

An einer Schweizer Populationsstichprobe wurden mittels Multiplex-PCR und automatisierter Fluoreszenzdetektion (Applied Biosystem 373A DNA Sequencer) die Allel- und Genotypfrequenzen der Short tandem repeat (STR) loci VWA, HUMTHO1 und F13A1 bestimmt. Die Daten wurden umfangreichen statistischen Analysen unterzogen. Alle Loci erfüllen die Hardy-Weinberg-Kriterien. Die ermittelten Daten erlauben die Abschätzung der Häufigkeit des Vorkommens eines Multiplex-STR-Profils in der Schweizer Bevölkerung zur Anwendung in forensischen DNA-Analysen und Vaterschaftsuntersuchungen.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Brown AHD, Feldman MW, Nevo E (1980) Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96: 523–536

    Google Scholar 

  • Chakraborty R, Smouse PE, Neel JV (1988) Population amalgamation and genetic variation: observations on artificially agglomerated tribal populations of Central and South America. Am J Hum Genet 43: 709–725

    Google Scholar 

  • Chakraborty R, Fornage M, Guegue R, Boerwinkle E (1991) Population genetics of hypervariable loci: analysis of PCR based VNTR polymorphism within a population. In: Burke T, Dolf G, Jeffreys AJ, Wolff R (eds) DNA Fingerprinting: approaches and applications. Birkhäuser, Berlin, pp 127–143

    Google Scholar 

  • Edwards A, Civitello A, Hammond HA, Caskey CT (1991) DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 49: 746–756

    Google Scholar 

  • Edwards A, Hammond H, Jin L, Caskey CT, Chakraborty R (1992) Genetic variation at five trimeric and tetrameric repeat loci in four human population groups. Genomics 12: 241–253

    Google Scholar 

  • Gill P, Kimpton CP, Sullivan K (1992) A rapid method for identifying fixed specimens by DNA profiling. Electrophoresis 13: 173–175

    Google Scholar 

  • Grimberg J, Nawoschik S, Belluscio L, McKee R, Turck A, Eisenberg A (1989) A simple and efficient nonorganic procedure for the isolation of genomic DNA from blood. Nucleic Acids Res 17: 8390

    Google Scholar 

  • Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361–372

    Google Scholar 

  • Karlin S, Cameron EC, Williams PT (1981) Sibling and parentoffspring correlation estimation with variable family size. Proc Natl Acad Sci USA 78: 2664–2668

    Google Scholar 

  • Kimpton CP, Walton A, Gill P (1992) A further tetranucleotide repeat polymorphism in the VWF gene. Human Mol Genet 1: 287

    Google Scholar 

  • Kimpton CP, Gill P, Walton A, Urquhart A, Millican ES, Adams M (1993) Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Methods Appl 3: 13–22

    Google Scholar 

  • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583–590

    Google Scholar 

  • Nei M, Roychoudhury AK (1974) Sampling variances of heterozygosity and genetic distance. Genetics 76: 379–390

    Google Scholar 

  • Polymeropoulos MH, Xiao H, Rath DS, Merril CR (1991a) Tetranucleotide repeat polymorphism at the human tyrosine hydrolase gene (TH). Nucleic Acids Res 19: 3753

    Google Scholar 

  • Polymeropoulos MH, Rath DS, Xiao H, Merril CR (1991b) Tetranucleotide repeat polymorphism at the human coagulation factor XIII A subunit gene (F13A1). Nucleic Acids Res 19: 4036

    Google Scholar 

  • Saiki RK, Scharf S, Faloona T, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin genomic sequences and restriction analysis for diagnosis of sickle cell anemia. Science 230: 1350–1354

    Google Scholar 

  • Sullivan KM, Pope S, Gill P, Robertson JM (1992) Automated DNA profiling by fluorescent labeling of PCR products. PCR Methods Appl 2: 34–40

    Google Scholar 

  • Waye JS, Presley L, Budowle B, Shutler GG, Fourney RM (1989) A simple method for quantifying human genomic DNA in forensic specimen extracts. Biotechniques 7: 852–855

    Google Scholar 

  • Weir BS (ed) (1990) Multiple tests. In: Genetic Data Analysis. Sinauer, Sunderland, Massachusetts, pp 109–110

    Google Scholar 

  • Weir BS (1992) Independence of VNTR alleles defined by fixed bins. Genetics 130: 873–887

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Hochmeister, M.N., Jung, J.M., Budowle, B. et al. Swiss population data on three tetrameric short tandem repeat loci — VWA, HUMTH01, and F13A1 —derived using multiplex PCR and laser fluorescence detection. Int J Leg Med 107, 34–36 (1994). https://doi.org/10.1007/BF01247272

Download citation

  • Received:

  • Revised:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01247272

Key words

Schlüsselwörter

Navigation