Skip to main content
Log in

Growth phase-dependent modification of RNA polymerase in Escherichia coli

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

During the transition of Escherichia coli cultures from exponential growth to stationary phase, the pre-existing RNA polymerase was found to be converted into at least three different holoenzyme forms, which could be separated by phosphocellulose column chromatography. The relative levels of these three holoenzyme forms changed depending on the phase of cell growth. The altered stationary phase forms of RNA polymerase showed promoter recognition properties that were different from those of the holoenzyme from exponentially growing cells. Enzyme reconstitution experiments showed that the altered promoter selectivity was due to modification of the core enzyme. We propose that modulation of RNA polymerase plays a role in the global switch of gene expression during the transition from exponential growth to stationary phase.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Aldea M, Garrido T, Hernandez-Chico C, Vicente M, Kushner SR (1989) Induction of a growth-phase-dependent promoter triggers transcription of bolA, an Escherichia coli morphogene. EMBO J 8:3923–3931

    Google Scholar 

  • Aldea M, Garrido T, Pla J, Vicente M (1990) Division genes in Escherichia coli are expressed coordinately to cell septum requirements by gearbox promoters. EMBO J 9:3787–3894

    Google Scholar 

  • Atlung T, Nielsen A, Hansen FG (1989) Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growthphase dependent gene expression in Escherichia coli. J Bacteriol 171:1683–1691

    Google Scholar 

  • Buchanan CE, Sowell MO (1982) Synthesis of penicillin-binding protein 6 by stationary-phase Escherichia coli. J Bacteriol 151:491–494

    Google Scholar 

  • De la Rosa MA, de Pedro MA, Vazquez D (1982) Modification of penicillin-binding proteins of Escherichia coli associated with changes in the state of growth of the cells. FEMS Lett 14:91–94

    Google Scholar 

  • Diaz-Guerra L, Moreno F, Millan JS (1989) Cloning and mapping of the genetic determinants for microcin C7 production and immunity. J Bacteriol 171:2960–2968

    Google Scholar 

  • Enami M, Ishihama A (1982) Biosynthesis of RNA polymerase in Escherichia coli, XII. Noncoordinate synthesis of core enzyme subunits after suppression of cell growth. Mol Gen Genet 185:373–387

    Google Scholar 

  • Fujita N, Nomura T, Ishihama A (1987) Promoter selectivity of Escherichia coli RNA polymerase. Purification and properties of holoenzyme containing the heat-shock σ subunit. J Biol Chem 262:1855–1859

    Google Scholar 

  • Fukuda R, Iwakura Y, Ishihama A (1974) Heterogeneity of RNA polymerase in Escherichia coli. J Mol Biol 83:353–367

    Google Scholar 

  • Gonzalez N, Wiggs J, Chamberlin M (1977) A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase. Arch Biochem Biophys 182:404–408

    Google Scholar 

  • Helmann JD, Chamberlin M (1988) Structure and function of bacterial sigma factors. Annu Rev Biochem 57:839–872

    Google Scholar 

  • Hernandes-Chico C, Millan JS, Kolter R, Moreno F (1986) Growth phase and OmpR regulation of transcription of microcin B17 genes. J Bacteriol 167:1058–1065

    Google Scholar 

  • Ishihama A (1981) Subunit assembly of Escherichia coli RNA polymerase. Adv Biophys 21:163–173

    Google Scholar 

  • Ishihama A (1988) Promoter selectivity of prokaryotic RNA polymerases. Trends Genet 4:282–286

    Google Scholar 

  • Ishihama A, Ito K (1972) Subunits of RNA polymerase in function and structure, II. Reconstitution of Escherichia coli RNA polymerase from isolated subunits. J Mol Biol 72:111–123

    Google Scholar 

  • Kajitani M, Ishihama A (1983a) Determination of the promoter strength in the mixed transcription system: Promoters of lactose, tryptophan and ribosomal protein L10 operons from Escherichia coli. Nucl Acids Res 11:671–686

    Google Scholar 

  • Kajitani M, Ishihama A (1983b) Determination of the promoter strength in the mixed transcription system, II. Promoters of ribosomal RNA, ribosomal protein S1 and recA protein operons from Escherichia coli. Nucleic Acids Res 11:3837–3887

    Google Scholar 

  • Kawakami K, Saitoh T, Ishihama A (1979) Biosynthesis of RNA polymerase in Escherichia coli. IX. Growth-dependent variations in the synthesis rate, content and distribution of RNA polymerase. Mol Gen Genet 174:107–116

    Google Scholar 

  • Kobayashi M, Nagata K, Ishihama A (1990) Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter −35 region on promoter strength. Nucleic Acids Res 18:7367–7372

    Google Scholar 

  • Wada A, Yamazaki Y, Fujita N, Ishihama A (1990) Structure and probable genetic location of a “ribosome modulation factor” associated with 1005 ribosomes in stationary-phase. Proc Natl Acad Sci 87:2657–2661

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

This is paper no. 9 in the series “Promoter Selectivity of Escherichia coli RNA polymerase”. Paper 8 is Kobayashi et al. (1990)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ozakil, M., Wada, A., Fujita, N. et al. Growth phase-dependent modification of RNA polymerase in Escherichia coli . Molec. Gen. Genet. 230, 17–23 (1991). https://doi.org/10.1007/BF00290644

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00290644

Key words

Navigation