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Case studies on breeding systems and its consequences for germplasm conservation

I. Isoenzyme diversity in wild Lima bean populations in central Costa Rica

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Summary

This study gives the results of allozyme diversity within and among 20 wild Lima bean populations uniformly distributed throughout the Central Valley of Costa Rica. The electrophoretic analysis of seven enzyme systems show five monomorphic loci and a relatively low level of polymorphism for the other loci. This moderate level of polymorphism is unexpected for a species for which a fair amount of allogamy rates has been reported, at least among the cultivated forms. The genetic parameters (mainly percentage of polymorphic loci, mean genetic diversity, percentage of heterozygotes and fixation index) indicate a tendency for a predominantly selfing breeding system in the wild Lima beans although some values range between selfing and mixed-animal breeding systems. Very low within-population diversity is observed while a good diversity is found among populations. Results also show a departure from Hardy-Weinberg equilibrium on most analyzed populations in the target site This might be due to populations divided into subpopulations among which no natural crosses occur randomly, to weeding practices or to overlap of generations within some populations. All the results obtained in this work are discussed in view of further studies for the planning of in situ conservation in a quickly evolving tropical environment.

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References

  • Allard, RW (1988) Genetic changes associated with the evolution of adaptedness in cultivated plants and their wild progenitors. J Heredity 79 (4): 225–238

    Google Scholar 

  • Altieri, MA & Merrick, LC (1987) In situ conservation of crop genetic resources through maintenance of traditional farming systems. Econ Bot 41 (1): 86–96

    Google Scholar 

  • Astley, D (1992) Preservation of genetic diversity and accession integrity. Field Crops Res 29: 205–224

    Google Scholar 

  • Baudoin, JP (1991) La culture et l'amélioration de la légumineuse alimentaire Phaseolus lunatus L. en zones tropicales. Centre Technique de Coopération Agricole et Rurale (CTA), Ede, Pays-Bas et Faculté des Sciences Agronomiques de Gembloux (FSAGx), Belgique

    Google Scholar 

  • Benz, BF (1988) In situ conservation of the genus Zea in the Sierra de Manatlán biosphere reserve. Proceedings of Recent Advances in the Conservation and Utilization of Genetic Resources, pp 59–69. CIMMYT, Mexico

    Google Scholar 

  • Bianchi-Hall, CM, Keys, RD, Stalker, HT & Murphy, JP (1993) Diversity of seed storage protein patterns in wild peanuts (Arachis, Fabaceae) species. Plant Syst Evol 186 (1–2): 1–15

    Google Scholar 

  • Breese, EL (1989) Regeneration and multiplication of germplasm resources in seed genebanks: the scientific background. International Board for Plant Genetic Resources (IBPGR), Rome, Italy

    Google Scholar 

  • Brown, AHD (1978) Isozymes, plant population genetic structure and genetic conservation. Theor Appl Gen 52: 145–157

    Google Scholar 

  • Brown, AHD (1979) Enzyme polymorphism in plant populations. Theor Popul Biol 15: 1–42

    Google Scholar 

  • Brown, AHD (1990) Genetic characterization of plant mating systems. In: Brown, AHD, Clegg, MT, Kahler, AL & Weir, BS (eds) Plant Population Genetics, Breeding and Genetic Resources, pp 145–162. Sinauer Associates Inc. Publishers, Sunderland, Massachusetts, USA

    Google Scholar 

  • Brown, AHD & Allard, RW (1970) Estimation of the mating system in open-pollinated maize populations using isozyme polymorphisms. Genetic 66: 133–145

    Google Scholar 

  • Brown, AHD, Clegg, MT, Kahler, AL & Weir, BS (1990) Plant population genetics, breeding and genetic resources. Sinauer Associates Inc. Publishers, Sunderland, Massachusetts, USA

    Google Scholar 

  • Bruford, MW, Hanotte, O, Brookfield, JFY & Burke, T (1992) Single-locus and multilocus DNA fingerprinting. In: Hoelzel, AR (ed) Molecular Genetic Analysis of Populations—A Practical Approach, pp 225–269. Oxford University Press, Oxford, England

    Google Scholar 

  • Brush, SB (1991) A farmer-based approach to conserving crop germplasm. Econ Bot 45 (2): 153–165

    Google Scholar 

  • Chambers, SM (1983) Genetic principles for managers. In: Schonewald-Cox, CM, Chambers, SM, MacBryde, B & Thomas, WL (eds) Genetics and Conservation, pp 15–46, Benjamin/Cummings, Menlo Park, CA, USA

    Google Scholar 

  • Clegg, MT (1980) Measuring plant mating systems. BioScience 30: 814–818

    Google Scholar 

  • Cohen, JI, Alcorn, JB & Potter, CS (1991) Utilization and conservation of genetic resources: international projects for sustainable agriculture. Econ Bot 45 (2): 190–199

    Google Scholar 

  • Crossa, J, Hernández, CM, Bretting, P, Eberhart, SA & Taba, S (1993) Statistical genetic considerations for maintaining germplasm collections. Theor Appl Gen 86 (6): 673–678

    Google Scholar 

  • Debouck, DG (1987) Phaseolus germplasm collection in Central Costa Rica. January 4–January 16, 1987. Report AGPG/IBPGR: 87/52, International Board for Plant Genetic Resources (IBPGR), Rome, Italy

    Google Scholar 

  • Debouck, DG & Tohme, J (1989) Implicaciones que tienen los estudios sobre los origines del frijol común, Phaseolus vulgaris L. para los mejoradores de frijol. In: Beebe, S (ed) Temas actuales en mejoramiento genético del frijol común, pp 3–44. Memorias del Taller Internacional de Mejoramiento Genético de Frijol, Documento de Trabajo no. 47, Centro Internacional de Agricultura Tropical (CIAT), Cali, Colombia

    Google Scholar 

  • Debouck, DG, Toro, O, Paredes, OM, Johnson, WC & Gepts, P (1993) Genetic diversity and ecological distribution of Phaseolus vulgaris (Fabaceae) in northwestern South America. Econ Bot 47 (4): 408–423

    Google Scholar 

  • Delgado, Salinas A, Bonet, A & Gepts, P (1988) The wild relative of Phaseolus vulgaris in Middle America. In: Gepts, P (ed) Genetic resources of Phaseolus beans; their maintenance, domestication, evolution, and utilization, pp 163–184. Kluwer Academic Publishers, Dordrecht, Holland

    Google Scholar 

  • Ehrman, T & Cocks, PS (1990) Ecogeography of annual legumes in Syria: distribution patterns. J Appl Ecol 27: 578–591

    Google Scholar 

  • Ennos, RA (1990) Detection and measurement of selection: genetic and ecological approaches. In: Brown, AHD, Clegg, MT, Kahler, AL & Weir, BS (eds) Plant Population Genetics, Breeding and Genetic Resources, pp 200–214, Sinauer Associates Inc. Publishers, Sunderland, Massachusetts, USA

    Google Scholar 

  • Frankel, OH (1974) Genetic conservation: our evolutionary responsibility. Genetics 78: 53–65

    Google Scholar 

  • Frankel, OH & Soulé, ME (1981) Conservation and evolution. Cambridge University Press, Cambridge, England

    Google Scholar 

  • Franklin, JF (1993) Preserving biodiversity: species, ecosystems, or landscapes? Ecol Applic 3 (2): 202–205

    Google Scholar 

  • Hamrick, JL & Godt, MJW (1990) Allozymes diversity in plant species. In: Brown, AHD, Clegg, MT, Kahler, AL & Weir, BS (eds) Plant Population Genetics, Breeding and Genetic Resources, pp 43–63. Sinauer Associates Inc., Sunderland, Massachusetts, USA

    Google Scholar 

  • Harlan, JR (1976) Genetic resources in wild relative of crops. Crop Sci 16: 329–333

    Google Scholar 

  • Hedrick, PW & Miller, PS (1992) Conservation genetics: techniques and fundamentals. Ecol Applic 2(1): 30–46

    Google Scholar 

  • Hillis, DM & Mortiz, C (1990) An overview of applications of molecular systematics. In: Hillis, DM & Moritz, C (eds) Molecular Systematics, pp 502–515. Sinauer Associates, Inc., Sunderland, Massachusetts, USA

    Google Scholar 

  • Hoelzel, AR (1992) Molecular genetic analysis of populations—A practical approach. The Practical Approach Series, IRL Press, Oxford, UK

    Google Scholar 

  • Hussain, A, Bushuk, W, Ramírez, H & Roca, W (1988) A practical guide for electrophoretic analysis of isoenzymes and proteins in cassava, field beans and forage legumes. Working Document no. 40, Centro Internacional de Agricultura Tropical (CIAT), Cali, Colombia

    Google Scholar 

  • Ingram, CB & Williams, JT (1984) In situ conservation of wild relatives of crops. In: Holden, JHW & Williams, JT (eds) Crop Genetic Resources: Conservation and Evaluation, pp 163–179. George Allen & Unwin, London, England

    Google Scholar 

  • Jain, SK (1975) Genetic reserves. In: Frankel, OH & Hawkes, JG (eds) Crop Genetic Resources for Today and Tomorrow, pp 379–396, Cambridge University Press, Cambridge, England

    Google Scholar 

  • Kimura, M (1990) Theorie neutraliste de l'évolution. Nouvelle Bibliothèque Scientifique, Flammarion, Paris, France

    Google Scholar 

  • Koenig, R & Gepts, P (1989a) Segregation and linkage of genes for seed proteins, isozymes and morphological traits in common bean (Phaseolus vulgaris). J Hered 80: 455–459

    Google Scholar 

  • Koenig, R & Gepts, P (1989b) Allozyme diversity in wild Phaseolus vulgaris: further evidence for two major centers of genetic diversity. Theor Appl Gen 78: 809–817

    Google Scholar 

  • Kresovich, S & McFerson, JR (1992) Assessment and management of plant genetic diversity: considerations of intra- and interspecific variation. Field Crops Res 29: 185–204

    Google Scholar 

  • Lande, R (1988) Genetics and demography in biological conservation. Science 241: 1455–1460

    Google Scholar 

  • Lefort-Buson, M, Hebert, Y & Damerval, C (1988) Les outils d'évaluation de la diversité génétique et phénotypique. Agronomie 8 (3): 173–178

    Google Scholar 

  • Lucotte, G (1983) Génétique des populations. Initiation théorique et biochimique à l'étude du polymorphisme. InterEditions, Paris, France

    Google Scholar 

  • Maquet, A, Gutierez, A & Debouck, DG (1990) Further biochemical evidence for the existence of two gene pools in Lima beans. Annu Rep Bean Improv Coop 33: 128–129

    Google Scholar 

  • Maquet, A, Wathelet, B & Baudoin, J-P (1994) Etude du réservoir génétique de la légumineuse alimentaire Phaseolus lunatus L. par l'analyse électrophorétique d'isozymes. Bull Rech Agron Gembloux 29(3): 369–381

    Google Scholar 

  • Marshall, DR (1990) Crop genetic resources: current and emerging issues. In: Brown, ADH, Clegg, MT & Weir, BS (eds) Plant Population Genetics, Breeding and Genetic Resources, pp 367–388. Sinauer Associates Inc. Publishers, Sunderland, Massachusetts, USA

    Google Scholar 

  • Marshall, DR & Brown, AHD (1975) Optimum sampling strategies in genetic conservation. In: Frankel, OH & Hawkes, JG (eds) Crop Genetic Resources for Today and Tomorrow, pp 53–80. Cambridge University Press, Cambridge, England

    Google Scholar 

  • Motro, U & Thomson, G (1982) On heterozygosity and the effective size of populations subject to size changes. Evolution 36 (5): 1059–1066

    Google Scholar 

  • Nakamura, Y, Leppert, M, O'Connell, P, Wolfe, R, Holm, T, Culver, M, Martin, C, Fujimoto, E, Hoff, M, Kumlin, E & White, R (1987) Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235: 1616–1622

    Google Scholar 

  • National Research Council (1992) Conserving Biodiversity—A Research Agenda for Development Agencies. BOSTID Report, 72, National Academy Press, USA

    Google Scholar 

  • Nei, M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci, USA 70 12(I): 3321–3323

    Google Scholar 

  • Nei, M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, USA

    Google Scholar 

  • Ollitrault P (1987) Evaluation génétique des sorghos cultivés (Sorghum bicolor L. Moench) par l'analyse conjointe des diversités enzymatique et morphophysiologique—Relations avec les sorghos sauvages. Thèse de Doctorat, Université de Paris-Sud, Centre d'Orsay, France

    Google Scholar 

  • Pasteur, N, Pasteur, G, Bonhomme, F, Catalan, J & Britton-Davidian, J (1987) Manuel technique de génétique par électrophorèse des protéines. Ed. Lavoisier TEC&DOC, Paris, France

    Google Scholar 

  • Ritland, K (1990) Gene identity and the genetic demography of plant population. In: Brown, ADH, Clegg, MT, Kahler, AL & Weir, BS (eds) Plant Population Genetics, Breeding and Genetic Resources, pp 181–199. Sinauer Associates Inc. Publishers, Sunderland, Massachusetts, USA

    Google Scholar 

  • Schaal, BA, O'Kane, SLJr & Rogstad, SH (1991) DNA variation in plant populations. Tree 6 (10): 329–333

    Google Scholar 

  • Singh, RB & Williams, JT (1984) Maintenance and multiplication of plant genetic resources: In: Holden, JHW & Williams, JT (eds) Crop Genetic Resources: Conservation and Evaluation, pp 120–130. George Allen & Unwin, London, England

    Google Scholar 

  • Varvio, S-L, Chakraborty, R & Nei, M (1986) Genetic variation in subdivided populations and conservation genetics. Heredity 57: 189–198

    Google Scholar 

  • Wade, MJ & McCauley, DE (1988) Extinction and recolonization: their effects on the genetic differentiation of local populations. Evolution 42 (5): 995–1005

    Google Scholar 

  • Weeden, NF, Doyle, JF & Lavin, M (1989) Distribution and evolution of a glucosephosphate isomerase duplication in the Leguminosae. Evolution 43 (8): 1637–1651

    Google Scholar 

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Maquet, A., Bi, I.Z., Rocha, O.J. et al. Case studies on breeding systems and its consequences for germplasm conservation. Genet Resour Crop Evol 43, 309–318 (1996). https://doi.org/10.1007/BF00132950

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