Abstract
The differential display-polymerase chain reaction (DDRT-PCR) technique is a powerful method for detecting differentially expressed genes (Liang and Pardee 1992). Nonetheless, DDRT-PCR, with about 300 different primer combinations, typically results in about 50–100 differentially displayed bands, of which about 10%–40% may be artifacts. The number of artifacts can be reduced by including several identical RNA samples; however, because of the high number of artifacts it is essential to verify the differential expression. This can be done by several different quantitative or semi-quantitative approaches, e.g., northern blotting, nuclear run-on assay, quantitative PCR and RNase protection.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1995) Current Protocols in Molecular Biology, vol 3, John Wiley & Son, Inc
Davanloo P, Rosenberg AH, Dunn JJ, Studier FW (1984) Cloning and expression of the gene for bacteriophage T7 RNA polymerase. Proc Natl Acad Sci USA 81:2035–2039
Ferré F (1994) In: Mullis KB, Ferré F, Gibbs RA (eds) The Polymerase Chain Reaction, pp 67–86.
Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967–971
Marzluff WF, Huang RCC (1985) In: Harnes BD, Higgins SJ (eds) Transcription and Translation: A Practical Approach. IRL Press, Oxford, pp 89–129
Saccomanno CF, Chen JS, Nordstrom JL, Bordonaro M (1992) A faster ribonuclease protection assay. BioTechniques 13:847–849
Tabor S, Richardson CC (1985) A bacteriophage T7 polymerase/promotor system for controlled exclusive expression of specific genes. Proc Natl Acad Sci USA 82:1074–1078
Wang AM, Doyle MV, Mark DF (1989) Quantitation of mRNA by the polymerase chain reaction. Proc Natl Acad Sci USA:9717–9721
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1997 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Hummel, R., Jørgensen, M., Bévort, M., Grønborg, M., Leffers, H. (1997). Verification of Differential Display Results by RNase Protection. In: Micheli, M.R., Bova, R. (eds) Fingerprinting Methods Based on Arbitrarily Primed PCR. Springer Lab Manuals. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-60441-6_34
Download citation
DOI: https://doi.org/10.1007/978-3-642-60441-6_34
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-47812-3
Online ISBN: 978-3-642-60441-6
eBook Packages: Springer Book Archive