Abstract
Microbial laboratory communities have become model systems for studying the complex interplay between nonlinear dynamics of evolutionary selection forces, stochastic fluctuations arising from the probabilistic nature of interactions, and spatial organization. Major research goals are to identify and understand mechanisms that ensure viability of microbial colonies by allowing for species diversity, cooperative behavior and other kinds of “social” behavior. A synthesis of evolutionary game theory, nonlinear dynamics, and the theory of stochastic processes provides the mathematical tools and conceptual framework for a deeper understanding of these ecological systems. We give an introduction to the modern formulation of these theories and illustrate their effectiveness, focusing on selected examples of microbial systems. Intrinsic fluctuations, stemming from the discreteness of individuals, are ubiquitous, and can have important impact on the stability of ecosystems. In the absence of speciation, extinction of species is unavoidable, may, however, take very long times. We provide a general concept for defining survival and extinction on ecological time scales. Spatial degrees of freedom come with a certain mobility of individuals. When the latter is sufficiently high, bacterial community structures can be understood through mapping individual-based models, in a continuum approach, onto stochastic partial differential equations. These allow progress using methods of nonlinear dynamics such as bifurcation analysis and invariant manifolds. We conclude with a perspective on the current challenges in quantifying bacterial pattern formation, and how this might have an impact on fundamental research in nonequilibrium physics .
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsNotes
- 1.
The two-species Lotka–Volterra equations describe a predator–prey system where the per capita growth rate of the prey decreases linearly with the number of predators present. In the absence of prey, predators die, but there is a positive contribution to their growth which increases linearly with the amount of prey present [22, 23].
- 2.
Note that ε is the fraction of carbon source kept by cooperators solely for themselves and \(x(1-\epsilon)\) is the amount of carbon source shared with the whole community. Hence, the linear growth rates of cooperators and defectors would be \(\epsilon + x(1-\epsilon) -c\) and \(x(1-\epsilon)\), respectively, where c is the metabolic cost for invertase production.
- 3.
You may also want to haven a look at the movies posted on http://www.theorie.physik.uni-muenchen.de/lsfrey/research/fields/biological_physics/2007_004/. There is also a Wolfram demonstration project that can be downloaded from the internet: http://demonstrations.wolfram.com/BiodiversityInSpatialRockPaperScissorsGames/.
References
L. Hall-Stoodley, J.W. Costerton, P. Stoodley, Nat. Rev. Microbiol. 2, 95 (2004)
T.J. Battin, W.T. Sloan, S. Kjelleberg, H. Daims, I.M. Head, T.P. Curtis, L. Eberl, Nat. Rev. Microbiol. 5, 76 (2007)
G.J. Velicer, Trends Microbiol. 11, 330 (2003)
J.B. Xavier, K.R. Foster, Proc. Natl. Acad. Sci. USA 104, 876 (2007)
C.D. Nadell, J.B. Xavier, S.A. Levin, K.R. Foster, PLoS Biol. 6, e14 (2008)
B. Kerr, M.A. Riley, M.W. Feldman, B.J.M. Bohannan, Nature 418, 171 (2002)
J.B. Xavier, E. Martinez-Gracia, K.R. Foster, Am. Nat. 174, 1 (2009)
J. Gore, H. Youk, A. van Oudenaarden, Nature 459, 253 (2009)
J.S. Chuang, O. Rivoire, S. Leibler, Science 323, 272 (2009)
S.A. Levin, Am. Nat. 108, 207 (1974)
M.P. Hassell, H.N. Comins, R.M. May, Nature 353, 255 (1991)
R. Durrett, S. Levin, Theor. Popul. Biol. 46, 363 (1994)
T. Reichenbach, M. Mobilia, E. Frey, Nature 448, 1046 (2007)
S.A. West, A.S. Griffin, A. Gardner, S.P. Diggle, Nat. Rev. Microbiol. 4, 597 (2006)
R.M. May, W.J. Leonard, SIAM J. Appl. Math. 29, 243 (1975)
M.J. Osborne, An Introduction to Game Theory (Oxford University Press, Oxford, 2004)
J.F. Nash, Proc. Natl. Acad. Sci. USA 36, 48 (1950)
R.M. Dawes, Annu. Rev. Psychol. 31, 169 (1980)
R. Axelrod, W.D. Hamilton, Science 211, 1390 (1981)
J. Maynard Smith, G.R. Price, Nature 246, 15 (1973)
J. Maynard Smith, Evolution and the Theory of Games (Cambridge University Press, Cambridge, 1982)
A.J. Lotka, J. Am. Chem. Soc. 42, 1595 (1920)
V. Volterra, Mem. Accad. Lincei 2, 31 (1926)
J. Hofbauer, K. Sigmund, Evolutionary Games and Population Dynamics (Cambridge University Press, Cambridge, 1998)
M.E. Hibbing, C. Fuqua, M.R. Parsek, S.B. Peterson, Nat. Rev. Microviol. 8, 15 (2010)
J. Roughgarden, Ecology 3, 453 (1971)
A. Melbinger, J. Cremer, E. Frey, Evolutionary game theory in growing populations. Phys. Rev. Lett. 105, 178101 (2010)
S. Wright, Proc. Natl. Acad. Sci. USA 31, 382 (1945)
S. Wright, Evolution and the Genetics of Populations (Chicago University Press, Chicago, IL, 1969)
W.J. Ewens, Mathematical Population Genetics, 2nd edn. (Springer, New York, NY, 2004)
P.A. Moran, The Statistical Processes of Evolutionary Theory (Clarendon, Oxford, 1964)
S.H. Strogatz, Nonlinear Dynamics and Chaos (Westview, Boulder, CO, 1994)
D. Greig, M. Travisano, Proc. R. Soc. Lond. B 271, S25 (2004)
A. Buckling, F. Harrison, M. Vos, M.A. Brockhurst, A. Gardner, S.A. West, A. Griffin, FEMS Microbiol. Ecol. 62, 135 (2007)
R.L. Trivers, Q. Rev. Biol. 46, 35 (1971)
C.M. Waters, B.L. Bassle, Annu. Rev. Cell Dev. Biol. 21, 319 (2005)
R. Durrett, S. Levin, J. Theor. Biol. 185, 165 (1997)
R. Durrett, S. Levin, Theor. Popul. Biol. 53, 30 (1998)
T.L. Czárán, R.F. Hoekstra, L. Pagie, Proc. Natl. Acad. Sci. USA 99, 786 (2002)
R. Axelrod, The Evolution of Cooperation (Basic Books, New York, NY, 1984)
M.A. Nowak, Science 314, 1560 (2006)
T. Yamagishi, J. Pers. Soc. Psychol. 51, 110 (1986)
W.D. Hamilton, Narrow Roads of Gene Land: Evolution of Social Behaviour (Oxford University Press, Oxford, 1996)
J.F. Crow, M. Kimura, An Introduction to Population Genetics (Blackburn Press, Caldwell, NJ, 2009)
J. Cremer, T. Reichenbach, E. Frey, New J. Phys. 11, 093029 (2009)
E. Ben-Jacob, I. Cohen, H. Levine, Adv. Phys. 49, 395 (2000)
O. Hallatschek, P. Hersen, S. Ramanathan, D.R. Nelson, Proc. Natl. Acad. Sci. USA 104, 19926 (2007)
C.J. Ingham, E.B. Jacob, BMC Microbiol. 8, 36 (2008)
A.T. Henrici, The Biology of Bacteria: The Bacillaceae, 3rd edn. (Heath, Lexington, MA 1948)
E. Ben-Jacob, I. Cohen, I. Golding, D.L. Gutnick, M. Tcherpakov, D. Helbing, I.G. Ron Open, Physica A 282, 247 (2000)
M. Matsushita, H. Fujikawa, Physica A 168, 498 (1990)
R. Rudner, O. Martsinkevich, W. Leung, E.D. Jarvis, Mol. Microbiol. 27, 687 (1998)
M. Eisenbach, Mol. Microbiol. 4, 161 (1990)
J. Henrichsen, Acta Pathol. Microbiol. Scand. B 80, 623 (1972)
J. Henrichsen, L.O. Froholm, K. Bovre, Acta Pathol. Microbiol. Scand. B 80, 445 (1972)
S. Park, P.M. Wolanin, E.A. Yuzbashyan, H. Lin, N.C. Darnton, J.B. Stock, P. Silberzan, R. Austin, Proc. Natl. Acad. Sci. USA 100, 13910 (2003)
O. Hallatschek, D.R. Nelson, Theor. Popul. Biol. 73, 158 (2008)
H.H. McAdams, A. Arkin, Trends Genet. 15, 65 (1999)
M. Kaern, T.C. Elston, W.J. Blake, J.J. Collins, Nat. Rev. Microbiol. 6, 451 (2005)
J.W. Veening, W.K. Smits, O.P. Kuipers, Annu. Rev. Microbiol. 62, 193 (2008)
W.K. Smits, O.P. Kuipers, J.W. Veening, Nat. Rev. Microbiol. 4, 259 (2006)
D. Dubnau, R. Losick, Mol. Microbiol. 61, 564 (2006)
M. Leisner, K. Stingl, E. Frey, B. Maier, Curr. Opin. Microbiol. 11, 553 (2008)
M. Delbrück, J. Chem. Phys. 8, 120 (1940)
A. Traulsen, J.C. Claussen, C. Hauert, Phys. Rev. Lett. 95, 238701 (2005)
T. Reichenbach, M. Mobilia, E. Frey, Phys. Rev. E 74, 051907 (2006)
A. Traulsen, J.C. Claussen, C. Hauert, Phys. Rev. E 74, 011901 (2006)
J. Cremer, T. Reichenbach, E. Frey, Eur. Phys. J. B 63, 373 (2008)
N.G. van Kampen, Stochastic Processes in Physics and Chemistry (North-Holland, Amsterdam, 1981)
C.W. Gardiner, Handbook of Stochastic Methods (Springer, Berlin, Heidelberg, 2007)
T. Antal, I. Scheuring, Bull. Math. Biol. 68, 1923 (2006)
C. Taylor, Y. Iwasa, M.A. Nowak, J. Theor. Biol. 243, 245 (2006)
M. Ifti, B. Bergersen, Eur. Phys. J. E 10, 241 (2003)
M. Ifti, B. Bergersen, Eur. Phys. J. B 37, 101 (2004)
A. Dobrinevski, E. Frey, Extinction in neutrally stable stochastic Lotka-Volterra models, Submitted [arXiv:1001.5235]
M. Berr, T. Reichenbach, M. Schottenloher, E. Frey, Phys. Rev. Lett. 102, 048102 (2009)
R.M. May, Stability and Complexity in Model Ecosystems, 2nd edn. (Princeton University Press, Princeton, NJ, 1974)
J.D. Murray, Mathematical Biology, 3rd edn. (Springer, Berlin, Heidelberg, 2002)
A.M. Turing, Philos. Trans. R. Soc. Lond. B 237, 37 (1952)
M.A. Nowak, R.M. May, Nature 359, 826 (1992)
M.P. Hassell, H.N. Comins, R.M. May, Nature 370, 290 (1994)
B. Blasius, A. Huppert, L. Stone, Nature 399, 354 (1999)
A.A. King, A. Hastings, Theor. Popul. Biol. 64, 431 (2003)
G. Szabo, C. Hauert, Phys. Rev. Lett. 89, 118101 (2002)
C. Hauert, M. Doebeli, Nature 428, 643 (2004)
T.M. Scanlon, K.K. Caylor, I. Rodriguez-Iturbe, Nature 449, 209 (2007)
S. Kefi, M. Rietkerk, C.L. Alados, Y. Pueyo, V.P. Papanastasis, A. ElAich, P.C. de Ruiter, Nature 449, 213 (2007)
G. Szabó, G. Fáth, Phys. Rep. 446, 97 (2007)
M. Perc, A. Szolnoki, G. Szabó, Phys. Rev. E 75, 052102 (2007)
M.A. Nowak, Evolutionary Dynamics (Belknap Press, Cambridge, MA, 2006)
O.A. Igoshin, R. Welch, D. Kaiser, G. Oster, Proc. Natl. Acad. Sci. USA 101, 4256 (2004)
A. McKane, D. Alonso, Bull. Math. Biol. 64, 913 (2002)
E. Liebermann, C. Hauert, M.A. Nowak, Nature 433, 312 (2005)
M. Mobilia, I.T. Georgiev, U.C. Täuber, Phys. Rev. E 73, 040903(R) (2006)
M. Mobilia, I.T. Georgiev, U.C. Täuber, J. Stat. Phys. 128, 447 (2007)
J.B.C. Jackson, L. Buss, Proc. Natl. Acad. Sci. USA 72, 5160 (1975)
O. Gilg, I. Hanski, B. Sittler, Science 302, 866 (2001)
B. Sinervo, C.M. Lively, Nature 380, 240 (1996)
B.C. Kirkup, M.A. Riley, Nature 428, 412 (2004)
A.J. Nicholson, Aust. J. Zool. 2, 9 (1954)
T. Reichenbach, M. Mobilia, E. Frey. J. Theor. Biol. 254, 368 (2008)
T. Reichenbach, M. Mobilia, E. Frey. Phys. Rev. Lett. 99, 238105 (2007)
S. Wiggins, Introduction to Applied Nonlinear Dynamical Systems and Chaos (Springer, Berlin, Heidelberg, 1990)
M.C. Cross, P.C. Hohenberg, Rev. Mod. Phys. 65, 851 (1993)
I.S. Aranson, L. Kramer, Rev. Mod. Phys. 74, 99 (2002)
W. van Saarloos, Phys. Rep. 386, 29 (2003)
K. Tainaka, Phys. Rev. E 50, 3401 (1994)
K. Sato, N. Konno, T. Yamaguchi, Mem. Muroran Inst. Technol. 47, 109 (1997)
G. Szabó, A. Szolnoki, R. Izsak, J. Phys. A Math. Gen. 37, 2599 (2004)
M. Peltomaki, M. Alava, Phys. Rev. E 78, 031906 (2008)
T. Reichenbach, E. Frey, Phys. Rev. Lett. 101, 058102 (2008)
M.R. Parsek, E.P. Greenberg, Trends Microbiol. 13, 27 (2005)
C.T. MacDonald, J.H. Gibbs, A.C. Pipkin, Biopolymers 6, 1 (1968)
G.M. Schütz, Exactly Solvable Models for Many-Body Systems Far from Equilibrium, Vol. 19 of Phase Transitions and Critical Phenomena (Academic, San Diego, CA, 2001), pp. 1–251
M. Mobilia, T. Reichenbach, H. Hinsch, T. Franosch, E. Frey, Banach Center Publ. 80, 101 (2008); arXiv:cond-mat/0612516
T.E. Harris, Ann. Probab. 2, 969 (1974)
H. Hinrichsen, Adv. Phys. 49, 815 (2000)
C. Castellano, S. Fortunato, V. Loreto, Rev. Mod. Phys. 81, 591 (2009)
P. Clifford, A. Sudbury, Biometrika 60, 581 (1973)
R. Holley, T.M. Liggett, Ann. Probab. 6, 198 (1978)
T.M. Liggett, Stochastic Interacting Systems: Contact, Voter and Exclusion Processes (Springer, Berlin, Heidelberg, 1999)
L. Frachebourg, P.L. Krapivsky, E. Ben-Naim, Phys. Rev. E 54, 6186 (1996)
L. Frachebourg, P.L. Krapivsky, E. Ben-Naim, Phys. Rev. Lett. 77, 2125 (1996)
S. Rulands, T. Reichenbach, E. Frey, Three-fold way to extinction in populations of cyclically competing species, J. Stat. Mech. L01003 (2011)
A. Winkler, T. Reichenbach, E. Frey, Phys. Rev. E 81, 060901(R) (2010)
D.-Q. Jiang, M. Qian, M.-P. Qian, Mathematical Theory of Nonequilibrium Steady States (Springer, Berlin, Heidelberg, 2004)
F. Schlögl, Z. Phys. 198, 559 (1967)
E.T. Jaynes, Ann. Rev. Phys. Chem. 3, 579 (1980)
P. Glansdorff, I. Prigogine, Thermodynamic Theory of Structure, Stability and Fluctuations (Wiley-Interscience, New York, NY, 1971)
S. Goldstein, J.L. Lebowitz, Physica D 193, 53 (2004)
U. Seifert, Phys. Rev. Lett. 95, 040602 (2005)
B. Andrae, J. Cremer, T. Reichenbach, E. Frey, Phys. Rev. Lett. 104, 218102 (2010)
Acknowledgements
We are indebted to Benjamin Andrae, Maximilian Berr, Jonas Cremer, Alexander Dobrinevsky, Anna Melbinger, Mauro Mobilia, Steffen Rulands, and Anton Winkler, with whom we had the pleasure to work on game theory. They have contributed with a multitude of creative ideas and through many insightful discussions have shaped our understanding of the topic. Financial support from the German Excellence Initiative via the program “Nanosystems Initiative Munich” and the German Research Foundation via the SFB TR12 “Symmetries and Universalities in Mesoscopic Systems” is gratefully acknowledged.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Frey, E., Reichenbach, T. (2011). Bacterial Games. In: Meyer-Ortmanns, H., Thurner, S. (eds) Principles of Evolution. The Frontiers Collection. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-18137-5_13
Download citation
DOI: https://doi.org/10.1007/978-3-642-18137-5_13
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-18136-8
Online ISBN: 978-3-642-18137-5
eBook Packages: Physics and AstronomyPhysics and Astronomy (R0)