Abstract
Provenance describes the process which led to the creation of a piece of data. Tracking provenance of experiment results is essential in modern environments which support conducting of in silico experiments. We present a provenance tracking approach developed as part of the virtual laboratory of the ViroLab project. The applied provenance solution is motivated by the Semantic Grid vision as an infrastructure for e-Science. Provenance data is represented in XML and modeled as ontologies described in the OWL knowledge representation language. The provenance tracking system, PROToS, has been designed and implemented to address important stages of the knowledge management lifecycle.
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This work is supported by the European Union through the IST-027446 project ViroLab and by the Foundation for Polish Science within the Domestic Grant for Young Scientists.
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References
Balis, B., Bubak, M., Dziwisz, J., Truong, H.-L., Fahringer, T.: Integrated Monitoring Framework for Grid Infrastructure and Applications. In: Innovation and the Knowledge Economy. Issues, Applications, Case Studies, Ljubljana, Slovenia, October 2005, pp. 269–276. IOS Press, Amsterdam (2005)
Bean, J.: XML for Data Architects: Designing for Reuse and Integration. Morgan Kaufmann, San Francisco (2003)
Foster, I., Kesselman, C., Tuecke, S.: The anatomy of the grid: Enabling scalable virtual organizations. International Journal of High Perform. Comput. Applications 15(3), 200–222 (2001)
Goble, C.: Position statement: Musings on provenance, workflow and (semantic web) annotations for bioinformatics. In: Data provenance/derivation workshop (October 2002)
Groth, P., Jiang, S., Miles, S., Munroe, S., Tan, V., Tsasakou, S., Moreau, L.: D3.1.1: An Architecture for Provenance Systems. Technical report, University of Southampton (2006)
Hey, A.J.G., Trefethen, A.E.: The UK e-Science Core Programme and the Grid. Future Generation Computer Systems 18(8), 1017–1031 (2002)
Nemeth, Z., Sunderam, V.: Virtualization in grids: A semantical approach. In: Rana, O.F., Cunha, J.C. (eds.) Grid Computing: Software Environments and Tools, Springer, Heidelberg (2006)
Oinn, T., Li, P., Kell, D.B., Goble, C., Goderis, A., Greenwood, M., Hull, D., Stevens, R., Turi, D., Zhao, J.: Taverna / myGrid: aligning a workflow system with the life sciences community. In: Taylor, I., Deelman, E., Gannon, D., Shields, M. (eds.) Workflows for e-Science, pp. 300–319. Springer, New York (2007)
Robinson, A., Stevens, R.D., Goble, C.A.: myGrid: Personalised Bioinformatics on the Information Grid. In: Proc. 11th International Conference on Intelligent Systems in Molecular Biology (June 2003)
de Roure, D., Jennings, N.R., Shadbolt, N.: The Semantic Grid: a Future e-Science Infrastructure, Grid Computing–Making the Global Infrastructure a Reality, pp. 437–470. Wiley, Chichester (2003)
Sloot, P.M., Tirado-Ramos, A., Altintas, I., Bubak, M., Boucher, C.: From Molecule to Man: Decision Support in Individualized E-Health. Computer 39(11), 40–46 (2006)
Taylor, I., Shields, M., Wang, I., Harrison, A.: The Triana Workflow Environment: Architecture and Applications. In: Taylor, I., Deelman, E., Gannon, D., Shields, M. (eds.) Workflows for e-Science, pp. 320–339. Springer, New York (2007)
Simmhan, Y.L., Plale, B., Gannon, D., Marru, S.: Performance Evaluation of the Karma Provenance Framework for Scientific Workflows. In: Moreau, L., Foster, I. (eds.) IPAW 2006. LNCS, vol. 4145, Springer, Heidelberg (2006)
Szomszor, M., Moreau, L.: Recording and reasoning over data provenance in web and grid services. In: Meersman, R., Tari, Z., Schmidt, D.C. (eds.) CoopIS 2003, DOA 2003, and ODBASE 2003. LNCS, vol. 2888, pp. 603–620. Springer, Heidelberg (2003)
Zhao, Y., Wilde, M., Foster, I.: Applying the Virtual Data Provenance Model. In: Moreau, L., Foster, I. (eds.) IPAW 2006. LNCS, vol. 4145, Springer, Heidelberg (2006)
Zhao, J., Goble, C., Stevens, R.: Semantically linking and browsing provenance logs for e-science. In: Proc. of the 1st International Conference on Semantics of a Networked World, Paris, France. LNCS, Springer, Heidelberg (2004)
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Baliś, B., Bubak, M., Wach, J. (2008). Provenance Tracking in the ViroLab Virtual Laboratory. In: Wyrzykowski, R., Dongarra, J., Karczewski, K., Wasniewski, J. (eds) Parallel Processing and Applied Mathematics. PPAM 2007. Lecture Notes in Computer Science, vol 4967. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-68111-3_40
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DOI: https://doi.org/10.1007/978-3-540-68111-3_40
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