Abstract
Life science researchers increasingly rely on the web as a primary source of data, forcing them to apply the same rigor to its use as to an experiment in the laboratory. The \({}^{\mbox{\scriptsize my}}\)Grid project is developing the use of workflows to explicitly capture web-based procedures, and provenance to describe how and why results were produced. Experience within \({}^{\mbox{\scriptsize my}}\)Grid has shown that this provenance metadata is formed from a complex web of heterogenous resources that impact on the production of a result. Therefore we have explored the use of Semantic Web technologies such as RDF, and ontologies to support its representation and used existing initiatives such as Jena and LSID, to generate and store such material. The effective presentation of complex RDF graphs is challenging. Haystack has been used to provide multiple views of provenance metadata that can be further annotated. This work therefore forms a case study showing how existing Semantic Web tools can effectively support the emerging requirements of life science research.
Keywords
- Resource Description Framework
- Domain Name System
- Service Invocation
- Provenance Data
- Provenance Information
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsPreview
Unable to display preview. Download preview PDF.
References
Karp, P.: A Strategy for Database Interoperation. Journal of Computational Biology 2, 573–586 (1995)
Program, H.G.: Genomics and its impact on science and society: A 2003 primer. Technical report, U.S. Department of Energy (2003)
Fox, G., Walker, D.: e-Science Gap Analysis. Technical report, Indiana University and Cardiff University, UK e-Science Center (2003)
Stevens, R., Robinson, A., Goble, C.: myGrid: Personalised Bioinformatics on the Information Grid. In: International Conference on Intelligent Systems in Molecular Biology (2003)
Preus, M.: The Williams Syndrome: Objective Definition and Diagnosis. Clinical Genetics 25, 422–428 (1984)
Hendler, J.: Communication: Enhanced Science and the Semantic Web. Science 299, 520–521 (2003)
Martin, S., Senger, M., Niemi, M.: Life Sciences Identifiers second revised submission. Technical report, I3C (2003)
Quan, D., Karger, D.R.: How to make a semantic web browser. In: Proc. of the Thirteenth International World Wide Web Conference (WWW 2004), pp. 255–265. ACM, New York (2004)
Horrocks, I., Patel-Schneider, P.F., van Harmelen, F.: From SHIQ and RDF to OWL: The making of a web ontology language. Journal of Web Semantics 1, 7–26 (2003)
Cline, M., Shigeta, R., Wheeler, R., Siani-Rose, M., Kulp, D., Loraine, A.: The effects of alternative splicing on transmembrane proteins in the mouse genome. In: Pacific Symposium on Biocomputing, vol. 9, pp. 17–28 (2004)
Christensen, E., Curbera, F., Meredith, G., Weerawarana, S.: Web Services Description Language (WSDL) 1.1, W3C Note (2001)
Wroe, C., Stevens, R., Goble, C., Roberts, A., Greenwood, M.: A Suite of DAML+OIL Ontologies to Describe Bioinformatics Web Services and Data. The International Journal of Cooperative Information Systems 12, 597–624 (2003)
Quan, D., Huynh, D., Karger, D.R.: Haystack: A platform for authoring end user semantic web applications. In: Fensel, D., Sycara, K., Mylopoulos, J. (eds.) ISWC 2003. LNCS, vol. 2870, pp. 738–753. Springer, Heidelberg (2003)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2004 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Zhao, J., Wroe, C., Goble, C., Stevens, R., Quan, D., Greenwood, M. (2004). Using Semantic Web Technologies for Representing E-science Provenance. In: McIlraith, S.A., Plexousakis, D., van Harmelen, F. (eds) The Semantic Web – ISWC 2004. ISWC 2004. Lecture Notes in Computer Science, vol 3298. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-30475-3_8
Download citation
DOI: https://doi.org/10.1007/978-3-540-30475-3_8
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-23798-3
Online ISBN: 978-3-540-30475-3
eBook Packages: Springer Book Archive