Abstract
Aptamer-based trapping techniques are in general suitable to replace common antibody-based enrichment approaches. A time-consuming isolation or clean-up is often necessary during sample preparation, e.g. for the detection of spores. For the development of bioanalytical routine approaches, aptamers with a high affinity to B. cereus spores were applied for the establishment and validation of an aptamer-based trapping technique in milk with fat contents between 0.3 and 3.5%. Thereby, enrichment factors of up to sixfold were achieved. The combination of an aptamer-based enrichment by magnetic separation and the subsequent specific real-time PCR detection represents a reliable and rapid detection system.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Helgason E, Økstad OA, Caugant DA, Johansen HA, Fouet A, Mock M, Hegna I, Kolstø A-B (2000) Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis—one species on the basis of genetic evidence. Appl Environ Microbiol 66:2627–2630
Drobniewski F (1994) The safety of Bacillus species as insect vector control agents. J Appl Bacteriol 76:101–109
Bruno JG, Ulvick SJ, Uzzell GL, Tabb JS, Valdes ER, Batt CA (2001) Novel immuno-FRET assay method for Bacillus spores and Escherichia coli O157:H7. Biochem Biophys Res Commun 287:875–880
Bennet RW, Harmon SM (1990) Bacillus cereus food poisoning. Laboratory diagnosis of infectious disesases: principles and practice. Bacterial, mycotic and parasitic diseases. Springer-Verlag, New York
Lambert B, Peferoen M (1992) Insecticidal promise of Bacillus thuringiensis. Bioscience 42:112–122
de Maagd RA, Bravo A, Crickmore N (2001) How Bacillus thuringiensis has evolved specific toxins to colonize the insect world. Trends Genet 17:193–199
Setlow P (1994) Mechanisms which contribute to the long-term survival of spores of Bacillus species. J Appl Bacteriol 76:49S–60S
Beutling D, Böttcher C (1998) Bacillus cereus: ein Risikofaktor in Lebensmitteln. Arch Lebensmittelhyg 49:90–96
Mahler H, Pasi A, Kramer JM, Schulte P, Scoging AC, Bar W, Krahenbuhl S (1997) Fulminant liver failure in association with the emetic toxin of Bacillus cereus. N Engl J Med 336:1142–1148
Dufrenne J, Bijwaard M, Te Giffel M, Beumer R, Notermans S (1995) Characteristics of some psychrotrophic Bacillus cereus isolates. Int J Food Microbiol 27:175–183
Regulation C (2005) No. 2073/2005 of 15 November 2005 on microbiological criteria for foodstuffs. Official J Eur Union L 338:1–26
Tombelli S, Minunni M, Mascini M (2007) Aptamers-based assays for diagnostics, environmental and food analysis. Biomol Eng 24:191–200
Wehrle E, Didier A, Moravek M, Dietrich R, Märtlbauer E (2010) Detection of Bacillus cereus with enteropathogenic potential by multiplex real-time PCR based on SYBR green I. Mol Cell Probes 24:24–130
Fischer C, Hünniger T, Jarck J-H, Frohnmeyer E, Kallinich C, Haase I, Hahn U, Fischer M (2015) Food sensing: aptamer-based trapping of Bacillus cereus spores with specific detection via real time PCR in milk. J Agric Food Chem 63:8050–8057
Hünniger T, Wessels H, Fischer C, Paschke-Kratzin A, Fischer M (2014) Just in time-selection: a rapid semiautomated SELEX of DNA aptamers using magnetic separation and BEAMing. Anal Chem 86:10940–10947
Hünniger T, Fischer C, Wessels H, Hoffmann A, Paschke-Kratzin A, Haase I, Fischer M (2015) Food sensing: selection and characterization of DNA aptamers to Alicyclobacillus spores for trapping and detection from orange juice. J Agric Food Chem 63:2189–2197
Hünniger T, Felbinger C, Wessels H, Mast S, Hoffmann A, Schefer A, Martlbauer E, Paschke-Kratzin A, Fischer M (2015) Food targeting: a real-time PCR assay targeting 16S rDNA for direct quantification of Alicyclobacillus spp. Spores after aptamer-based enrichment. J Agric Food Chem 63:4291–4296
Acknowledgement
This research project was supported by the German Ministry of Economics and Technology (via AiF) and the FEI (Forschungskreis der Ernaehrungsindustrie e. V., Bonn, Germany); Project AiF 331 ZN.
The author’s thank Dr. Tim Hünniger, Jan-Hinnerk Jarck, and Esther Frohnmeyer for practical support and discussion.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media LLC
About this protocol
Cite this protocol
Fischer, C., Fischer, M. (2017). Aptamer-Based Trapping: Enrichment of Bacillus cereus Spores for Real-Time PCR Detection. In: Holst, O. (eds) Microbial Toxins. Methods in Molecular Biology, vol 1600. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6958-6_6
Download citation
DOI: https://doi.org/10.1007/978-1-4939-6958-6_6
Published:
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-6956-2
Online ISBN: 978-1-4939-6958-6
eBook Packages: Springer Protocols