Skip to main content

Bioinspired Assemblies of Plant Cell Walls for Measuring Protein-Carbohydrate Interactions by FRAP

  • Protocol
  • First Online:
Protein-Carbohydrate Interactions

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1588))

Abstract

The interactions of proteins involved in plant cell wall hydrolysis, such as enzymes and CBMs, significantly determine their role and efficiency. In order to go beyond the characterization of interactions with simple ligands, bioinspired assemblies combined with the measurement of diffusion and interaction by FRAP offer a relevant alternative for highlighting the importance of different parameters related to the protein affinity and to the assembly.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 119.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Isikgor FH, Becer CR (2015) Lignocellulosic biomass: a sustainable platform for the production of bio-based chemicals and polymers. Polym Chem 6(25):4497ā€“4559

    ArticleĀ  CASĀ  Google ScholarĀ 

  2. Viikari L, VehmaanperƤ J, Koivula A (2012) Lignocellulosic ethanol: from science to industry. Biomass Bioenergy 46:13ā€“24

    ArticleĀ  CASĀ  Google ScholarĀ 

  3. Guo FF, Shi WJ, Sun W, Li XZ, Wang FF, Zhao J, Qu YB (2014) Differences in the adsorption of enzymes onto lignins from diverse types of lignocellulosic biomass and the underlying mechanism. Biotechnol Biofuels 7

    Google ScholarĀ 

  4. Guo J, Catchmark JM (2013) Binding specificity and thermodynamics of cellulose-binding modules from Trichoderma reesei Cel7A and Cel6A. Biomacromolecules 14(5):1268ā€“1277

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  5. PaĆ«s G, Tran V, Takahashi M, Boukari I, O'Donohue MJ (2007) New insights into the role of the thumb-like loop in GH-11 xylanases. Protein Eng Des Sel 20(1):15ā€“23

    ArticleĀ  PubMedĀ  Google ScholarĀ 

  6. Wang LQ, Wang YQ, Ragauskas AJ (2010) A novel FRET approach for in situ investigation of cellulase-cellulose interaction. Anal Bioanal Chem 398(3):1257ā€“1262

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  7. King JR, Bowers CM, Toone EJ (2015) Specific binding at the cellulose binding module-cellulose interface observed by force spectroscopy. Langmuir 31(11):3431ā€“3440

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  8. Carvajal-Millan E, Guilbert S, Morel MH, Micard V (2005) Impact of the structure of arabinoxylan gels on their rheological and protein transport properties. Carbohydr Polym 60(4):431ā€“438

    ArticleĀ  CASĀ  Google ScholarĀ 

  9. Carvajal-Millan E, Landillon V, Morel MH, Rouau X, Doublier JL, Micard V (2005) Arabinoxylan gels: impact of the feruloylation degree on their structure and properties. Biomacromolecules 6(1):309ā€“317

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  10. PaĆ«s G, Burr S, Saab M-B, Molinari M, AguiĆ©-BĆ©ghin V, Chabbert B (2013) Modeling progression of fluorescent probes in bioinspired lignocellulosic assemblies. Biomacromolecules 14(7):2196ā€“2205

    ArticleĀ  PubMedĀ  Google ScholarĀ 

  11. PaĆ«s G, Chabbert B (2012) Characterization of arabinoxylan/cellulose nanocrystals gels to investigate fluorescent probes mobility in bio-inspired models of plant secondary cell wall. Biomacromolecules 13:206ā€“214

    ArticleĀ  PubMedĀ  Google ScholarĀ 

  12. Ishikawa-Ankerhold HC, Ankerhold R, Drummen GPC (2012) Advanced fluorescence microscopy techniques-FRAP, FLIP, FLAP, FRET and FLIM. Molecules 17(4):4047ā€“4132

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  13. Lippincott-Schwartz J, Snapp E, Kenworthy A (2001) Studying protein dynamics in living cells. Nat Rev Mol Cell Biol 2(6):444ā€“456

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  14. PaĆ«s G (2014) Fluorescent probes for exploring plant cell wall deconstruction: a review. Molecules 19(7):9380ā€“9402

    ArticleĀ  PubMedĀ  Google ScholarĀ 

  15. PaĆ«s G, von Schantz L, Ohlin M (2015) Bioinspired assemblies of plant cell wall polymers unravel affinity properties of carbohydrate-binding modules. Soft Matter 11:6586ā€“6594

    ArticleĀ  PubMedĀ  Google ScholarĀ 

  16. Fong M, Berrin JG, Paƫs G (2016) Investigation of the binding properties of a multi-modular GH45 cellulase using bioinspired model assemblies. Biotechnol Biofuels 9:12

    ArticleĀ  PubMedĀ  PubMed CentralĀ  Google ScholarĀ 

  17. AguiĆ©-BĆ©ghin V, Molinari M, Hambarzymyan A, Foulon L, Habibi Y, Heim T, Blossey R, Douillard R (2009) Preparation of ordered films from cellulose nanocrystals. In: Roman M (ed) Model cellulosic surfaces, vol 1019. ACS symposium series 1019: American Chemical Society, Washington DC, USA, pp 115ā€“136

    Google ScholarĀ 

  18. Mueller F, Karpova TS, Mazza D, McNally JG (2012) Monitoring dynamic binding of chromatin proteins in vivo by fluorescence recovery after photobleaching chromatin remodeling. In: RHH M (ed) Methods in molecular biology, vol vol 833. Humana Press, New York, pp 153ā€“176

    Google ScholarĀ 

  19. Sprague BL, McNally JG (2005) FRAP analysis of binding: proper and fitting. Trends Cell Biol 15(2):84ā€“91

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  20. Hermanson GT (2008) Bioconjugate techniques, 2nd edn. Elsevier, London

    Google ScholarĀ 

Download references

Acknowledgment

This work was supported by INRA and the French National Research Agency (LIGNOPROG project ANR-14-CE05-0026).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gabriel Paƫs .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

Ā© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Paƫs, G. (2017). Bioinspired Assemblies of Plant Cell Walls for Measuring Protein-Carbohydrate Interactions by FRAP. In: Abbott, D., Lammerts van Bueren, A. (eds) Protein-Carbohydrate Interactions. Methods in Molecular Biology, vol 1588. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6899-2_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-6899-2_13

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6898-5

  • Online ISBN: 978-1-4939-6899-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics