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Application of SolCAP Genotyping in Potato (Solanum tuberosum L.) Association Mapping

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Plant Genotyping

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2638))

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Abstract

Potato variety development entails a number of breeding steps, as well as testing and, finally, commercialization. Historically, phenotypic assesment were carried out to select and germplasm development. The US Department of Agriculture (USDA) funded the Solanaceae Coordinated Agricultural Project (SolCAP) to decode genomic resources into tools that breeders and geneticists can use. This project resulted in the creation of a genome-wide single-nucleotide polymorphism (SNP) array that can be used to evaluate elite potato-breeding germplasm. This array was used to genotype a diverse panel of Solanum species, as well as numerous biparental, diploid, and tetraploid populations. It has high marker density to generate genetic maps that can be used to identify numerous quantitative trait loci (QTLs) for agronomic, quality, biotic, and abiotic resistance traits. Up to now, numerous QTLs for important traits have been identified using new diploid and tetraploid genetic maps. SNP markers were used to assess germplasm relationships and fingerprint varieties and identify candidate genes. The Infinium 8303 SolCAP Potato array offers a common set of SNP markers that can be used for mapping, germplasm assessment, and fingerprinting with confidence. This array has also been helpful in furthering our understanding of the potato genome. Furthermore, some other Infinium potato arrays (i.e., 12 K, 20 K, and 25 K) have been genotyped, and breeders can map quantitative trait loci (QTLs) across multiple populations to improve our understanding of economically important traits and lead to marker-assisted selection (MAS) and breeding and, ultimately, improved varieties.

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Author information

Authors and Affiliations

  1. Department of Agricultural Genetic Engineering, Nigde Omer Halisdemir University, Nigde, Turkey

    Muhammad Farhan Yousaf & Muhammad Naeem

  2. Department of Plant Breeding and Genetics, College of Agriculture, Bahauddin Zakariya University, Bahadur Sub Campus Layyah, Multan, Pakistan

    Muhammad Abu Bakar Zia

  3. Faculty of Technical Sciences, Center for Quantitative Genetics and Genomics, Aarhus University, Aarhus, Denmark

    Muhammad Farhan Yousaf

  4. Department of Agriculture Extension and Adaptive Research, Punjab Agriculture Department, Govt. of Pakistan, Attock, Punjab, Pakistan

    Muhammad Naeem

Authors
  1. Muhammad Farhan Yousaf
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  2. Muhammad Abu Bakar Zia
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  3. Muhammad Naeem
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Editor information

Editors and Affiliations

  1. College of Science and Engineering, Biological Sciences, Flinders University, Adelaide, SA, Australia

    Yuri Shavrukov

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Yousaf, M.F., Zia, M.A.B., Naeem, M. (2023). Application of SolCAP Genotyping in Potato (Solanum tuberosum L.) Association Mapping. In: Shavrukov, Y. (eds) Plant Genotyping. Methods in Molecular Biology, vol 2638. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3024-2_30

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  • DOI: https://doi.org/10.1007/978-1-0716-3024-2_30

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3023-5

  • Online ISBN: 978-1-0716-3024-2

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