Skip to main content

Immune Cell Lineage-Specific Chimerism Testing by Next-Generation Sequencing for Engraftment Monitoring After Allogeneic Hematopoietic Stem Cell Transplantation

  • Protocol
  • First Online:
Clinical Applications of Nucleic Acid Amplification

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2621))

  • 586 Accesses

Abstract

Chimerism is an unusual state in which a person’s body comprises cells from genetically different people. Chimerism testing allows monitoring for the relative proportion of recipient and donor-derived cell subsets in recipient blood and bone marrow. In the bone marrow transplant setting, chimerism testing is the standard diagnostic tool for early detection of graft rejection and the risk of malignant disease relapse. Chimerism testing enables the identification of patients with increased risk for recurrence of the underlying disease. Herein, we describe a step-by-step technical procedure of a novel, commercially available, next-generation sequencing-based chimerism testing method for use in the clinical laboratory.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Jacque N, Nguyen S, Golmard JL, Uzunov M, Garnier A, Leblond V, Vernant JP, Bories D, Dhedin N (2015) Chimerism analysis in peripheral blood using indel quantitative real-time PCR is a useful tool to predict post-transplant relapse in acute leukemia. Bone Marrow Transplant 50(2):259–265. https://doi.org/10.1038/bmt.2014.254

    Article  CAS  PubMed  Google Scholar 

  2. Baron F, Sandmaier BM (2006) Chimerism and outcomes after allogeneic hematopoietic cell transplantation following nonmyeloablative conditioning. Leukemia 20(10):1690–1700. https://doi.org/10.1038/sj.leu.2404335

    Article  CAS  PubMed  Google Scholar 

  3. Talwar S, Khan F, Nityanand S, Agrawal S (2007) Chimerism monitoring following allogeneic hematopoietic stem cell transplantation. Bone Marrow Transplant 39(9):529–535. https://doi.org/10.1038/sj.bmt.1705626

    Article  CAS  PubMed  Google Scholar 

  4. Bader P, Niethammer D, Willasch A, Kreyenberg H, Klingebiel T (2005) How and when should we monitor chimerism after allogeneic stem cell transplantation? Bone Marrow Transplant 35(2):107–119. https://doi.org/10.1038/sj.bmt.1704715

    Article  CAS  PubMed  Google Scholar 

  5. Matthes-Martin S, Lion T, Haas OA, Frommlet F, Daxberger H, Konig M, Printz D, Scharner D, Eichstill C, Peters C, Lawitschka A, Gadner H, Fritsch G (2003) Lineage-specific chimaerism after stem cell transplantation in children following reduced intensity conditioning: potential predictive value of NK cell chimaerism for late graft rejection. Leukemia 17(10):1934–1942. https://doi.org/10.1038/sj.leu.2403087

    Article  CAS  PubMed  Google Scholar 

  6. Miura Y, Tanaka J, Toubai T, Tsutsumi Y, Kato N, Hirate D, Kaji M, Sugita J, Shigematsu A, Iwao N, Ota S, Masauzi N, Fukuhara T, Kasai M, Asaka M, Imamura M (2006) Analysis of donor-type chimerism in lineage-specific cell populations after allogeneic myeloablative and non-myeloablative stem cell transplantation. Bone Marrow Transplant 37(9):837–843. https://doi.org/10.1038/sj.bmt.1705352

    Article  CAS  PubMed  Google Scholar 

  7. Zeiser R, Spyridonidis A, Wasch R, Ihorst G, Grullich C, Bertz H, Finke J (2005) Evaluation of immunomodulatory treatment based on conventional and lineage-specific chimerism analysis in patients with myeloid malignancies after myeloablative allogeneic hematopoietic cell transplantation. Leukemia 19(5):814–821. https://doi.org/10.1038/sj.leu.2403719

    Article  CAS  PubMed  Google Scholar 

  8. Bader P, Stoll K, Huber S, Geiselhart A, Handgretinger R, Niemeyer C, Einsele H, Schlegel PG, Niethammer D, Beck J, Klingebiel T (2000) Characterization of lineage-specific chimerism in patients with acute leukemia and myelodysplastic syndrome after allogeneic stem cell transplantation before and after relapse. Br J Haematol 108(4):761–768. https://doi.org/10.1046/j.1365-2141.2000.01927.x

    Article  CAS  PubMed  Google Scholar 

  9. Frankel W, Chan A, Corringham RE, Shepherd S, Rearden A, Wang-Rodriguez J (1996) Detection of chimerism and early engraftment after allogeneic peripheral blood stem cell or bone marrow transplantation by short tandem repeats. Am J Hematol 52(4):281–287. https://doi.org/10.1002/(SICI)1096-8652(199608)52:4<281::AID-AJH7>3.0.CO;2-O

    Article  CAS  PubMed  Google Scholar 

  10. Buno I, Nava P, Simon A, Gonzalez-Rivera M, Jimenez JL, Balsalobre P, Serrano D, Carrion R, Gomez-Pineda A, Diez-Martin JL (2005) A comparison of fluorescent in situ hybridization and multiplex short tandem repeat polymerase chain reaction for quantifying chimerism after stem cell transplantation. Haematologica 90(10):1373–1379

    CAS  PubMed  Google Scholar 

  11. Alizadeh M, Bernard M, Danic B, Dauriac C, Birebent B, Lapart C, Lamy T, Le Prise PY, Beauplet A, Bories D, Semana G, Quelvennec E (2002) Quantitative assessment of hematopoietic chimerism after bone marrow transplantation by real-time quantitative polymerase chain reaction. Blood 99(12):4618–4625. https://doi.org/10.1182/blood.v99.12.4618

    Article  CAS  PubMed  Google Scholar 

  12. Jimenez-Velasco A, Barrios M, Roman-Gomez J, Navarro G, Buno I, Castillejo JA, Rodriguez AI, Garcia-Gemar G, Torres A, Heiniger AI (2005) Reliable quantification of hematopoietic chimerism after allogeneic transplantation for acute leukemia using amplification by real-time PCR of null alleles and insertion/deletion polymorphisms. Leukemia 19(3):336–343. https://doi.org/10.1038/sj.leu.2403622

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Raja Rajalingam .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Wu, C., dela Cruz, T., Lai, J., Kong, D., Rajalingam, R. (2023). Immune Cell Lineage-Specific Chimerism Testing by Next-Generation Sequencing for Engraftment Monitoring After Allogeneic Hematopoietic Stem Cell Transplantation. In: Myers, M.B., Schandl, C.A. (eds) Clinical Applications of Nucleic Acid Amplification. Methods in Molecular Biology, vol 2621. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2950-5_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2950-5_11

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2949-9

  • Online ISBN: 978-1-0716-2950-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics