Skip to main content

Fluorescence Microscopy for Analysis of Relocalization of Structure-Specific Endonucleases

  • Protocol
  • First Online:
Homologous Recombination

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2153))

  • 2535 Accesses

Abstract

The analysis of protein relocalization by fluorescence microscopy has been important for studying processes involved in genome integrity maintenance at the cellular level. Structure-specific endonucleases are required for genome stability, and work in budding yeast has revealed that these proteins accumulate and colocalize at discrete subnuclear foci following DNA damage. Here we describe protocols for fluorescence microscopy analysis of live budding-yeast cells containing fluorescent-tagged proteins that have been useful for the study of endonuclease relocalization during the cell cycle and under DNA-damaging conditions, all of which can be extended to the analysis of other proteins.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Lisby M, Barlow JH, Burgess RC, Rothstein R (2004) Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins. Cell 118:699–713

    Article  CAS  Google Scholar 

  2. Lisby M, Rothstein R (2009) Choreography of recombination proteins during the DNA damage response. DNA Repair (Amst) 8:1068–1076

    Article  CAS  Google Scholar 

  3. Melo JA, Cohen J, Toczyski DP (2001) Two checkpoint complexes are independently recruited to sites of DNA damage in vivo. Genes Dev 15:2809–2821

    CAS  PubMed  PubMed Central  Google Scholar 

  4. Tkach JM, Yimit A, Lee AY, Riffle M, Costanzo M, Jaschob D et al (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14:966–976

    Article  CAS  Google Scholar 

  5. Dehe PM, Gaillard PH (2017) Control of structure-specific endonucleases to maintain genome stability. Nat Rev Mol Cell Biol 1:315–330

    Article  Google Scholar 

  6. Rass U (2013) Resolving branched DNA intermediates with structure-specific nucleases during replication in eukaryotes. Chromosoma 12:499–515

    Article  Google Scholar 

  7. Schwartz EK, Heyer WD (2011) Processing of joint molecule intermediates by structure-selective endonucleases during homologous recombination in eukaryotes. Chromosoma 120:109–127

    Article  CAS  Google Scholar 

  8. Saugar I, Jimenez-Martin A, Tercero JA (2017) Subnuclear relocalization of structure-specific endonucleases in response to DNA damage. Cell Rep 20:1553–1562

    Article  CAS  Google Scholar 

  9. Gallina I, Colding C, Henriksen P, Beli P, Nakamura K, Offman J et al (2015) Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control. Nat Commun 6:6533

    Article  Google Scholar 

  10. Janke C, Magiera MM, Rathfelder N, Taxis C, Reber S, Maekawa H et al (2004) A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 2:947–962

    Article  Google Scholar 

  11. Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A, Brachat A et al (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953–961

    Article  CAS  Google Scholar 

  12. Shaw SL, Yeh E, Bloom K, Salmon ED (1997) Imaging green fluorescent protein fusion proteins in Saccharomyces cerevisiae. Curr Biol 7:701–704

    Article  CAS  Google Scholar 

Download references

Acknowledgments

Work in J.A. Tercero’s lab is supported by the Spanish Ministry of Science, Innovation and Universities (MCIU) (grant BFU2016-77663-P AEI/FEDER UE). C.P. Lehmann is the recipient of a predoctoral fellowship (FPU16/01137) from MCIU. The CBMSO receives an institutional grant from Fundación Ramón Areces.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to José Antonio Tercero .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Lehmann, C.P., Saugar, I., Tercero, J.A. (2021). Fluorescence Microscopy for Analysis of Relocalization of Structure-Specific Endonucleases. In: Aguilera, A., Carreira, A. (eds) Homologous Recombination. Methods in Molecular Biology, vol 2153. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0644-5_35

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0644-5_35

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0643-8

  • Online ISBN: 978-1-0716-0644-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics